Bioconductor Biocversion

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BiocVersion

updated 13 months ago by ATpoint ★ 4.6k • written 13 months ago by paul.lempka02 • 0

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BiocVersion phangorn ShinyApps

updated 15 months ago by James W. MacDonald 67k • written 15 months ago by susan • 0

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BioCor bioc BiocVersion

15 months ago feifan • 0

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BiocVersion OrgDb clusterProfiler

2.2 years ago MK • 0

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1.6k

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BiocVersion

updated 3.5 years ago by shepherl 4.1k • written 3.5 years ago by J • 0

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destiny BiocVersion

updated 3.6 years ago by shepherl 4.1k • written 3.6 years ago by Yiming ▴ 10

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DESeq2 BiocVersion

updated 3.6 years ago by glennmaxwell229 • 0 • written 3.6 years ago by Daisy • 0

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bioconductoroversight news community BiocVersion

3.8 years ago Matthew Ritchie ▴ 1000

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versions BiocVersion dependencies

updated 3.9 years ago by shepherl 4.1k • written 3.9 years ago by sohitmiglani • 0

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2.5k

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bioconductoroversight community BiocVersion news

updated 3.9 years ago by aedin • 0 • written 4.0 years ago by Matthew Ritchie ▴ 1000

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massgeek Reactome Proteomics STRINGdb

4.2 years ago paula • 0

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2.8k

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docker BiocManager BiocVersion

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by Michael Steinbaugh ▴ 90

12 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0