Showing : biomaRt • reset
0
votes
0
replies
43
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
10 days ago Ensembl_Jorge • 0
0
votes
0
replies
88
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 22 days ago by 68k • written 22 days ago by • 0
1
vote
3
replies
1.3k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 4 months ago by ▴ 30
1
vote
1
reply
614
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 3 months ago by 68k • written 4 months ago by • 0
0
votes
3
replies
767
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 6 months ago by ★ 6.6k • written 6 months ago by ▴ 20
0
votes
4
replies
2.0k
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 5 months ago by • 0 • written 6 months ago by • 0
3
votes
5
replies
1.8k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 8 months ago by 68k • written 8 months ago by ▴ 10
0
votes
2
replies
1.5k
views
Error using useMart or useEnsembl
biomaRt
updated 8 months ago by 68k • written 8 months ago by • 0
0
votes
4
replies
1.6k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 8 months ago by 68k • written 8 months ago by • 0
3
votes
9
replies
1.8k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 7 months ago by • 0 • written 8 months ago by • 0
4
votes
9
replies
2.8k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 9 months ago by 68k • written 11 months ago by ▴ 20
0
votes
0
replies
775
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
11 months ago Ensembl_Jorge • 0
0
votes
1
reply
712
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 12 months ago by ★ 6.6k • written 12 months ago by • 0
2
votes
2
replies
1.6k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
12 months ago 2044291597 • 0
1
vote
3
replies
1.7k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 12 months ago by 68k • written 19 months ago by ▴ 10
1
vote
4
replies
1.7k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 10 months ago by • 0 • written 13 months ago by • 0
1
vote
4
replies
1.4k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
13 months ago kschecht • 0
2
votes
8
replies
3.5k
views
biomaRt getLDS error
biomaRt
13 months ago mark.dunning ▴ 20
1
vote
2
replies
1.4k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
15 months ago Svitlana ▴ 10
0
votes
0
replies
560
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
15 months ago Reese • 0
0
votes
2
replies
963
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
16 months ago landenshanie ▴ 40
0
votes
0
replies
513
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
16 months ago Abiologist • 0
1
vote
0
replies
917
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
16 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
891
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 17 months ago by 68k • written 17 months ago by ▴ 30
2
votes
2
replies
1.5k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 17 months ago by 68k • written 17 months ago by • 0
0
votes
1
reply
754
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
1.8k
views
error in mapIds function
mapIds biomaRt
updated 19 months ago by 700 • written 19 months ago by • 0
0
votes
2
replies
1.4k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
19 months ago eefernan5 • 0
3
votes
3
replies
16k
views
How to find rsID with biomaRt in R
biomaRt
updated 19 months ago by 68k • written 4.6 years ago by ▴ 10
0
votes
1
reply
648
views
biomaRt issue
biomaRt
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
1
vote
5
replies
2.1k
views
BiomaRt download data error
biomaRt
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
6
votes
9
replies
3.9k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 20 months ago by • 0 • written 20 months ago by • 0
1
vote
1
reply
2.1k
views
Error with biomaRt
biomaRt
updated 20 months ago by ★ 6.6k • written 20 months ago by • 0
4
votes
2
replies
1.2k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 20 months ago by ★ 4.1k • written 20 months ago by • 0
2
votes
2
replies
1.5k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
20 months ago bd2000 ▴ 30
1
vote
0
replies
685
views
News: Ensembl 111 has been released
Ensembl biomaRt
20 months ago Benjamin ▴ 30
0
votes
2
replies
1.2k
views
Problem with loading ensembl version 105.
biomaRt
21 months ago RC • 0
0
votes
1
reply
2.0k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
3
replies
1.7k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 22 months ago by ★ 3.4k • written 22 months ago by ▴ 30
4
votes
12
replies
2.3k
views
Ensembl down???
biomaRt
22 months ago • updated 21 months ago bas_work ▴ 30
3
votes
2
replies
1.1k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
22 months ago henrydionne ▴ 10
1
vote
2
replies
2.3k
views
How to find stop codons for a list of genes
stopcodon biomaRt
22 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.8k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
22 months ago • updated 19 months ago ScafioRuo • 0
12
votes
10
replies
16k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 18 months ago by • 0 • written 23 months ago by ▴ 20
0
votes
3
replies
1.1k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 23 months ago by 53k • written 23 months ago by • 0
1
vote
4
replies
1.4k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
24 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
8.7k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 23 months ago by 700 • written 3.1 years ago by ▴ 20
0
votes
2
replies
934
views
Biomart - upstream region of 'coding'
biomaRt
updated 2.0 years ago by ★ 6.6k • written 2.0 years ago by ▴ 20
0
votes
0
replies
793
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.1 years ago ali.oghabian • 0
1
vote
5
replies
1.1k
views
Errors with makeTxDbFromBiomart
biomaRt
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 10
1,081 results • Page 1 of 22
Recent ...
Replies
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Answer: EuroBioC2023 abstract submission is open! by efuite222 • 0
Abstract submissions are now open for the #EuroBioC2023 conference in Ghent, Belgium, from September 20-22; submit by April 14 for opportu…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Robert Baer ▴ 70
Popular Question to Stephen Piccolo ▴ 600
Popular Question to JKim • 0
Popular Question to Gordon Smyth 53k
Popular Question to Guangchuang Yu ★ 1.2k
Locations • All
United States, 1 hour ago
The city by the bay, 2 hours ago
United States, 2 hours ago
Barcelona, Spain, 2 hours ago
Pittsburgh, United States, 4 hours ago
Traffic: 626 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6