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biomaRt
•
reset
0
votes
2
replies
91
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 4 hours ago by
mdeea123
▴ 10 • written 15 hours ago by
hebda
• 0
3
votes
5
replies
1.2k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma
edgeR
biomaRt
updated 9 weeks ago by
James W. MacDonald
68k • written 9 weeks ago by
Jonathan
▴ 10
0
votes
2
replies
774
views
Error using useMart or useEnsembl
biomaRt
updated 9 weeks ago by
James W. MacDonald
68k • written 9 weeks ago by
rayanelkholdi
• 0
0
votes
4
replies
873
views
Biomart and ensembl not working?
ensembldb
biomaRt
updated 9 weeks ago by
James W. MacDonald
68k • written 9 weeks ago by
Zuzer
• 0
3
votes
9
replies
906
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi
EnsDb.Mmusculus.v79
biomaRt
org.Mm.eg.db
updated 6 weeks ago by
franknappi14
• 0 • written 10 weeks ago by
Nicholas
• 0
4
votes
9
replies
2.2k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus
biomaRt
updated 3 months ago by
James W. MacDonald
68k • written 4 months ago by
Benjamin
▴ 20
0
votes
0
replies
424
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
5 months ago
Ensembl_Jorge
• 0
0
votes
1
reply
500
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 5 months ago by
Mike Smith
★ 6.6k • written 5 months ago by
Abiologist
• 0
2
votes
2
replies
1.4k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
6 months ago • updated 5 months ago
2044291597
• 0
1
vote
3
replies
1.3k
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 6 months ago by
James W. MacDonald
68k • written 13 months ago by
Pez
▴ 10
1
vote
4
replies
1.2k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN
biomaRt
updated 4 months ago by
Adam
• 0 • written 6 months ago by
varga.luca
• 0
1
vote
4
replies
946
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
7 months ago
kschecht
• 0
2
votes
8
replies
2.3k
views
biomaRt getLDS error
biomaRt
7 months ago
mark.dunning
▴ 20
1
vote
2
replies
1.2k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
9 months ago
Svitlana
▴ 10
0
votes
0
replies
392
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
9 months ago
Reese
• 0
0
votes
2
replies
677
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
10 months ago
landenshanie
▴ 40
0
votes
0
replies
365
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
10 months ago
Abiologist
• 0
1
vote
0
replies
620
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
10 months ago
Aleena
▴ 30
1
vote
3
replies
669
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
bas_work
▴ 30
2
votes
2
replies
1.0k
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
sansan
• 0
0
votes
1
reply
545
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
Reeya
• 0
0
votes
1
reply
1.4k
views
error in mapIds function
mapIds
biomaRt
updated 13 months ago by
Marcel Ramos
700 • written 13 months ago by
Regina
• 0
0
votes
2
replies
1.2k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
13 months ago
eefernan5
• 0
3
votes
3
replies
14k
views
How to find rsID with biomaRt in R
biomaRt
updated 13 months ago by
James W. MacDonald
68k • written 4.1 years ago by
Federica
▴ 10
0
votes
1
reply
534
views
biomaRt issue
biomaRt
updated 13 months ago by
Mike Smith
★ 6.6k • written 13 months ago by
Fariz
• 0
1
vote
5
replies
1.7k
views
BiomaRt download data error
biomaRt
updated 13 months ago by
Mike Smith
★ 6.6k • written 13 months ago by
Max Bone
• 0
6
votes
9
replies
3.0k
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 13 months ago by
alexander3
• 0 • written 14 months ago by
Amparo
• 0
1
vote
1
reply
1.7k
views
Error with biomaRt
biomaRt
updated 14 months ago by
Mike Smith
★ 6.6k • written 14 months ago by
goldenboy
• 0
4
votes
2
replies
970
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 14 months ago by
Guido Hooiveld
★ 4.1k • written 14 months ago by
sansan
• 0
2
votes
2
replies
1.2k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
14 months ago
bd2000
▴ 30
1
vote
0
replies
525
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
14 months ago
Benjamin
▴ 30
0
votes
2
replies
995
views
Problem with loading ensembl version 105.
biomaRt
15 months ago
RC
• 0
0
votes
1
reply
1.7k
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 15 months ago by
James W. MacDonald
68k • written 15 months ago by
ai.yaku
• 0
0
votes
3
replies
1.3k
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 15 months ago by
Robert Castelo
★ 3.4k • written 15 months ago by
bd2000
▴ 30
4
votes
12
replies
1.9k
views
Ensembl down???
biomaRt
16 months ago • updated 15 months ago
bas_work
▴ 30
3
votes
2
replies
824
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
16 months ago
henrydionne
▴ 10
1
vote
2
replies
1.7k
views
How to find stop codons for a list of genes
stopcodon
biomaRt
16 months ago
Marek Gierlinski
▴ 30
0
votes
10
replies
1.5k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
16 months ago • updated 12 months ago
ScafioRuo
• 0
12
votes
10
replies
14k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 12 months ago by
juo5
• 0 • written 17 months ago by
Abhishek
▴ 20
0
votes
3
replies
892
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 17 months ago by
Gordon Smyth
52k • written 17 months ago by
Marilyn
• 0
1
vote
4
replies
1.2k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
18 months ago
andrew.b.kleist
▴ 10
7
votes
6
replies
7.5k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 17 months ago by
Marcel Ramos
700 • written 2.6 years ago by
Recep
▴ 20
0
votes
2
replies
797
views
Biomart - upstream region of 'coding'
biomaRt
updated 18 months ago by
Mike Smith
★ 6.6k • written 18 months ago by
andrebolerbarros
▴ 20
0
votes
0
replies
677
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
19 months ago
ali.oghabian
• 0
1
vote
5
replies
970
views
Errors with makeTxDbFromBiomart
biomaRt
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Jerina
▴ 10
3
votes
2
replies
2.3k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 19 months ago by
Guido Hooiveld
★ 4.1k • written 19 months ago by
Milan
▴ 10
0
votes
3
replies
1.4k
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 19 months ago by
Hervé Pagès
16k • written 20 months ago by
anavmar1
• 0
1
vote
2
replies
1.1k
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
20 months ago
Miguel
• 0
0
votes
1
reply
934
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
cstorer
• 0
0
votes
1
reply
2.7k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 20 months ago by
Michael Love
43k • written 20 months ago by
Benjamin
▴ 30
50 results • Page
1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA?
by
michaelarringtony
• 0
Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/
Comment: EdgeR Biological CVs
by
jeffreestary
• 0
By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…
Comment: How to reverse complement some elements of a DNAStringSet
by
shrill.asp.tufl
• 0
Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …
Comment: Ensembl site unresponsive via biomaRt
by
mdeea123
▴ 10
I am also having issues using BioMart to run code that has worked before. The problem first occurred last week. As I have encountered these…
Comment: Bioconductor unable to update 'curl'
by
kagodwi2
• 0
UPDATE: I was able to get curl to work! It seems that because the new version was literally JUST released, there is something "funky" goin…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
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