Showing : biomaRt • reset
5
votes
4
replies
9.8k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 10 months ago by 65k • written 3.7 years ago by • 0
3
votes
3
replies
9.5k
views
How to find rsID with biomaRt in R
biomaRt
updated 3 months ago by 65k • written 3.2 years ago by ▴ 10
22
votes
15
replies
7.5k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 6 months ago by ▴ 10 • written 2.1 years ago by ▴ 50
10
votes
10
replies
7.2k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 7 weeks ago by • 0 • written 6 months ago by ▴ 10
7
votes
5
replies
7.0k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 7 months ago by • 0 • written 2.0 years ago by ▴ 40
1
vote
7
replies
4.5k
views
Problems Installing biomaRt
biomaRt
updated 6 months ago by 65k • written 2.1 years ago by ▴ 20
7
votes
6
replies
4.2k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 690 • written 21 months ago by ▴ 20
4
votes
4
replies
1.8k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by • 0 • written 2.6 years ago by ▴ 10
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 42k • written 10 months ago by ▴ 30
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 13 months ago by ▴ 30
1
vote
4
replies
1.2k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 7 weeks ago by 65k • written 4.1 years ago by • 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 9 months ago by ★ 3.9k • written 9 months ago by ▴ 10
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 9 months ago by ▴ 50 • written 18 months ago by • 0
4
votes
12
replies
993
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
0
votes
1
reply
978
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
2
votes
4
replies
960
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
0
votes
1
reply
840
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 11 months ago by • 0
0
votes
10
replies
838
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 10 weeks ago ScafioRuo • 0
6
votes
9
replies
826
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
2
replies
814
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
797
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 9 months ago by 16k • written 9 months ago by • 0
0
votes
1
reply
740
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
2
replies
705
views
biomart not ound some prevous release
biomart rnaseq
written 5.2 years ago by ▴ 40
1
vote
4
replies
685
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
1
vote
2
replies
682
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
2
votes
2
replies
667
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
0
votes
1
reply
631
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
1
vote
2
replies
621
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
1
vote
5
replies
615
views
Errors with makeTxDbFromBiomart
biomaRt
updated 9 months ago by 65k • written 9 months ago by ▴ 10
0
votes
3
replies
481
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
2
replies
474
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
12 weeks ago eefernan5 • 0
1
vote
5
replies
456
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
1
reply
441
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
3
votes
2
replies
437
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
0
votes
2
replies
411
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
3
replies
406
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
0
votes
0
replies
388
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
4
votes
2
replies
374
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
0
votes
2
replies
374
views
Biomart - upstream region of 'coding'
biomaRt
updated 8 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
1
reply
311
views
error in mapIds function
mapIds biomaRt
updated 11 weeks ago by 690 • written 11 weeks ago by • 0
1
vote
1
reply
236
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
0
votes
1
reply
230
views
biomaRt issue
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
1
vote
0
replies
225
views
News: Ensembl 111 has been released
Ensembl biomaRt
4 months ago Benjamin ▴ 30
2
votes
2
replies
202
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 24 days ago by 65k • written 25 days ago by • 0
0
votes
3
replies
167
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 24 days ago by 65k • written 24 days ago by ▴ 30
0
votes
1
reply
154
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 5 weeks ago by 65k • written 5 weeks ago by • 0
46 results • Page 1 of 1
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Answer: Store output of matchPWM() by mat149 ▴ 70
hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm) ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …
Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]' by bandconductor • 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Votes
Comment: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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