Showing : biomart • reset
0
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0
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21
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Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 11 hours ago by 68k • written 12 hours ago by • 0
1
vote
3
replies
1.2k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 3 months ago by ▴ 30
1
vote
1
reply
599
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
3
replies
736
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 5 months ago by ★ 6.6k • written 5 months ago by ▴ 20
0
votes
4
replies
1.8k
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 4 months ago by • 0 • written 5 months ago by • 0
3
votes
5
replies
1.8k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 7 months ago by 68k • written 7 months ago by ▴ 10
0
votes
2
replies
1.5k
views
Error using useMart or useEnsembl
biomaRt
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
4
replies
1.6k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 7 months ago by 68k • written 7 months ago by • 0
3
votes
9
replies
1.7k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 7 months ago by • 0 • written 7 months ago by • 0
4
votes
9
replies
2.7k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 8 months ago by 68k • written 10 months ago by ▴ 20
0
votes
0
replies
744
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
10 months ago Ensembl_Jorge • 0
0
votes
1
reply
694
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 11 months ago by ★ 6.6k • written 11 months ago by • 0
2
votes
2
replies
1.6k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
11 months ago 2044291597 • 0
1
vote
3
replies
1.7k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 12 months ago by 68k • written 19 months ago by ▴ 10
1
vote
4
replies
1.6k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 10 months ago by • 0 • written 12 months ago by • 0
1
vote
4
replies
1.3k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
13 months ago kschecht • 0
2
votes
8
replies
3.4k
views
biomaRt getLDS error
biomaRt
13 months ago mark.dunning ▴ 20
1
vote
2
replies
1.4k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
14 months ago Svitlana ▴ 10
0
votes
0
replies
531
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
14 months ago Reese • 0
0
votes
2
replies
934
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
15 months ago landenshanie ▴ 40
0
votes
0
replies
488
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
15 months ago Abiologist • 0
1
vote
0
replies
882
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
15 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
871
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 16 months ago by 68k • written 16 months ago by ▴ 30
2
votes
2
replies
1.4k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
1
reply
731
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 17 months ago by 68k • written 17 months ago by • 0
0
votes
1
reply
1.8k
views
error in mapIds function
mapIds biomaRt
updated 18 months ago by 700 • written 18 months ago by • 0
0
votes
2
replies
1.4k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
18 months ago eefernan5 • 0
3
votes
3
replies
15k
views
How to find rsID with biomaRt in R
biomaRt
updated 19 months ago by 68k • written 4.5 years ago by ▴ 10
0
votes
1
reply
635
views
biomaRt issue
biomaRt
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
1
vote
5
replies
2.1k
views
BiomaRt download data error
biomaRt
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
6
votes
9
replies
3.8k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 19 months ago by • 0 • written 19 months ago by • 0
1
vote
1
reply
2.0k
views
Error with biomaRt
biomaRt
updated 19 months ago by ★ 6.6k • written 19 months ago by • 0
4
votes
2
replies
1.2k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 19 months ago by ★ 4.1k • written 19 months ago by • 0
2
votes
2
replies
1.4k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
19 months ago bd2000 ▴ 30
1
vote
0
replies
673
views
News: Ensembl 111 has been released
Ensembl biomaRt
20 months ago Benjamin ▴ 30
0
votes
2
replies
1.2k
views
Problem with loading ensembl version 105.
biomaRt
20 months ago RC • 0
0
votes
1
reply
2.0k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
3
replies
1.7k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 21 months ago by ★ 3.4k • written 21 months ago by ▴ 30
4
votes
12
replies
2.2k
views
Ensembl down???
biomaRt
21 months ago bas_work ▴ 30
3
votes
2
replies
1.0k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
21 months ago henrydionne ▴ 10
1
vote
2
replies
2.3k
views
How to find stop codons for a list of genes
stopcodon biomaRt
21 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.7k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
21 months ago • updated 18 months ago ScafioRuo • 0
12
votes
10
replies
15k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 17 months ago by • 0 • written 22 months ago by ▴ 20
0
votes
3
replies
1.1k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 22 months ago by 52k • written 22 months ago by • 0
1
vote
4
replies
1.4k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
23 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
8.7k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 23 months ago by 700 • written 3.1 years ago by ▴ 20
0
votes
2
replies
913
views
Biomart - upstream region of 'coding'
biomaRt
updated 24 months ago by ★ 6.6k • written 24 months ago by ▴ 20
0
votes
0
replies
779
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.0 years ago ali.oghabian • 0
1
vote
5
replies
1.1k
views
Errors with makeTxDbFromBiomart
biomaRt
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 10
3
votes
2
replies
2.7k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by ▴ 10
1,080 results • Page 1 of 22
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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design by James W. MacDonald 68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
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Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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