Showing : biomart • reset
21
votes
34
replies
4.5k
views
Biomart error when updating to R 4.0.2
Biomart
updated 15 months ago by ★ 5.3k • written 15 months ago by ▴ 40
21
votes
24
replies
9.7k
views
Problem with biomart's listMarts function
biomart bug
updated 5.7 years ago by ▴ 460 • written 6.2 years ago by ★ 1.9k
5
votes
19
replies
5.7k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
7.3 years ago k.askland ▴ 20
6
votes
18
replies
2.2k
views
biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
bioconductor biomart problem with connection
updated 5.6 years ago by ▴ 70 • written 5.6 years ago by ▴ 10
4
votes
17
replies
864
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 16 months ago by 3.4k • written 16 months ago by ▴ 10
5
votes
16
replies
2.2k
views
biomaRt error in getBM for hsapiens_gene_ensembl
biomart
updated 4.1 years ago by • 0 • written 4.1 years ago by ▴ 20
0
votes
15
replies
1.3k
views
Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 12.1 years ago by ▴ 500 • written 12.1 years ago by ▴ 220
0
votes
14
replies
469
views
Error while opening Mart with biomaRt package
software error ensembl biomart
2.1 years ago loicborcard01 • 0
2
votes
14
replies
2.6k
views
Unimart not available in 2015?
biomart uniprot unimart
6.2 years ago john ▴ 10
3
votes
14
replies
2.5k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
4.6 years ago daniel.carbajo • 0
2
votes
13
replies
1.5k
views
makeTranscriptDbFromBiomart failure from Data Anomaly
biomart genomicfeatures
updated 6.8 years ago by 15k • written 6.8 years ago by ▴ 80
3
votes
13
replies
1.9k
views
Getting errors with makeTxDbFromBiomart
genomicfeatures biomart maketxdbfrombiomart
updated 5.0 years ago by ▴ 790 • written 5.0 years ago by ▴ 10
2
votes
13
replies
1.7k
views
Getting R to talk to BioMart using biomaRt
biomart
updated 3.3 years ago by 58k • written 3.3 years ago by ▴ 10
0
votes
12
replies
1.7k
views
BioMart and Ensembl questions
convert biomaRt convert biomaRt
updated 12.3 years ago by ▴ 970 • written 12.4 years ago by ▴ 10
2
votes
12
replies
2.1k
views
Error: failed to load 'AnnotationHub' resource
biomart annotationhub
updated 6.2 years ago by 25k • written 6.2 years ago by ▴ 10
6
votes
12
replies
3.5k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 4.8 years ago by • 0 • written 5.0 years ago by ▴ 100
2
votes
12
replies
1.8k
views
biomaRt does not return entrezgene id
bioconductor biomart entrez gene identifiers ensembl ensembl mart
updated 4.8 years ago by ▴ 790 • written 4.8 years ago by • 0
3
votes
12
replies
1.1k
views
adding attributes affects number of results returned
biomaRt
updated 8 months ago by ★ 5.3k • written 5.0 years ago by • 0
0
votes
12
replies
1.3k
views
Biomart server down?
Genetics Cancer biomaRt Genetics Cancer biomaRt
updated 10.7 years ago by ▴ 660 • written 10.7 years ago by ▴ 20
0
votes
12
replies
1.1k
views
Gviz: feature protein_coding not working
gviz biomart
updated 5.5 years ago by ★ 1.6k • written 5.5 years ago by • 0
0
votes
12
replies
2.3k
views
problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 11.9 years ago by ★ 2.0k • written 11.9 years ago by ▴ 50
0
votes
11
replies
1.4k
views
Problems in retrieving 3'UTR sequences of ALL human genes using biomaRt
biomaRt biomaRt
updated 9.5 years ago by ★ 1.1k • written 9.5 years ago by ▴ 200
5
votes
11
replies
813
views
an error in BioMart regarding gene annotations
biomart AnnotationDbi
updated 3.5 years ago by ▴ 50 • written 3.6 years ago by ▴ 620
5
votes
11
replies
658
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 17 months ago by ★ 5.3k • written 17 months ago by • 0
2
votes
11
replies
2.4k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 11 months ago by ★ 5.3k • written 16 months ago by • 0
0
votes
11
replies
2.5k
views
Missing data after BiomaRt query
biomart bioconductor
updated 6.9 years ago by 15k • written 6.9 years ago by • 0
2
votes
10
replies
2.1k
views
biomaRt package problem
biomart
updated 6.2 years ago by ▴ 790 • written 6.2 years ago by • 0
0
votes
10
replies
1.4k
views
Querying dbSNP
biomaRt biomaRt
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 480
3
votes
10
replies
2.8k
views
Getting a list of all tRNA encoding genes for an organism?
trna ncrna genomicfeatures featuredb biomart
updated 6.8 years ago by 15k • written 6.8 years ago by ▴ 150
1
vote
10
replies
2.3k
views
Attributes construct error in biomaRt
biomart
updated 6.8 years ago by ▴ 90 • written 6.8 years ago by • 0
0
votes
10
replies
860
views
biomaRt manual
affy convert biomaRt affy convert biomaRt
updated 14.8 years ago by 6.5k • written 14.8 years ago by ★ 1.2k
0
votes
10
replies
1.3k
views
Retrieve Entrez IDs for enriched GO terms
Microarray Annotation GO limma GOstats biomaRt Microarray Annotation GO limma GOstats
updated 12.3 years ago by ★ 2.0k • written 12.3 years ago by ▴ 90
8
votes
10
replies
723
views
Genes listed in GO categories
goseq biomart
updated 3.6 years ago by 44k • written 3.6 years ago by • 0
9
votes
9
replies
2.7k
views
biomaRt error when connecting to host
biomart host connection
updated 4.8 years ago by ★ 5.3k • written 4.8 years ago by ★ 1.5k
0
votes
9
replies
1.2k
views
Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
SNP biomaRt SNP biomaRt
updated 10.2 years ago by ★ 6.7k • written 10.2 years ago by ▴ 100
4
votes
9
replies
1.8k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 7 months ago by ★ 5.3k • written 11 months ago by ▴ 20
1
vote
9
replies
673
views
How can I retrieve a protein's coding sequence using getSequence
biomaRt
14 months ago • updated 13 months ago heiko_kin ▴ 50
0
votes
9
replies
974
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 14.7 years ago by ★ 7.4k • written 14.7 years ago by ★ 2.2k
0
votes
9
replies
1.9k
views
Problems Counting Reads with summarizeOverlaps
biomaRt Rsamtools biomaRt Rsamtools
updated 8.1 years ago by ★ 6.7k • written 8.1 years ago by ▴ 300
3
votes
9
replies
967
views
find next non-overlapping nth elements of a given region
biomart granges findoverlaps
updated 5.6 years ago by 11k • written 5.6 years ago by ▴ 20
4
votes
9
replies
1.9k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 5.8 years ago by ▴ 20 • written 5.9 years ago by ▴ 790
1
vote
8
replies
2.3k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 22 months ago by 58k • written 22 months ago by ▴ 10
10
votes
8
replies
1.1k
views
Best alternative annotation package to BiomaRt
R biomaRt Ensembl rnaseq
2.5 years ago m93 ▴ 10
2
votes
8
replies
612
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt software error
updated 5 months ago by ★ 5.3k • written 19 months ago by • 0
1
vote
8
replies
1.5k
views
BiomaRt package not working
biomart getbm
4.7 years ago Didi ▴ 10
2
votes
8
replies
778
views
BiomaRt and phytozome
biomaRT Rcurl phytozome
updated 2.7 years ago by ★ 5.3k • written 2.7 years ago by ▴ 20
0
votes
8
replies
1.0k
views
Ensembl IDs 2 GO term enrichment --> simple solution without biomart? ( I can't install it because of RCurl)
GO GOstats biomaRt GO GOstats biomaRt
updated 13.3 years ago by ★ 5.5k • written 13.3 years ago by ▴ 270
0
votes
8
replies
1.2k
views
IPI to entrez id
Proteomics GO biomaRt Proteomics GO biomaRt
10.9 years ago Dick Beyer ★ 1.4k
0
votes
8
replies
1.2k
views
GoStats and microRNA pipeline using Biomart
GO GOstats biomaRt microRNA GO GOstats biomaRt microRNA
updated 10.8 years ago by ▴ 930 • written 10.8 years ago by ▴ 860
0
votes
8
replies
944
views
Snp matching
biomaRt biomaRt
updated 12.3 years ago by ▴ 660 • written 12.3 years ago by ▴ 250
50 results • Page 1 of 1
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Replies
Comment: Macbook M1 install genefilter failed by Ryan • 0
Yes, this solution worked for me as well.
Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea by Rory Stark ★ 4.3k
Nothing too unusual, just a bug where in certain conditions the `Called` columns were being computed using the unmerged datasets. This onl…
Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k
I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…
Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k
You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…
Comment: deseq2 + filtering low counts with noiseq function by Michael Love 35k
Nothing especially concerning about nonparametric methods in my opinion, except that with very low sample size they lose sensitivity. E.g. …
Votes
edgeR cpm() function with and without log2
edgeR cpm() function with and without log2
A: edgeR cpm() function with and without log2
A: edgeR cpm() function with and without log2
A: How to get all possible comparisons in DiffBind
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