Showing : biomart • reset
13
votes
8
replies
13k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 7.3 years ago by ▴ 790 • written 7.3 years ago by ▴ 90
2
votes
4
replies
10k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 6.5 years ago by ▴ 760 • written 6.7 years ago by ▴ 20
21
votes
24
replies
9.7k
views
Problem with biomart's listMarts function
biomart bug
updated 5.7 years ago by ▴ 460 • written 6.2 years ago by ★ 1.9k
0
votes
2
replies
8.7k
views
biomaRt proxy issues
biomaRt biomaRt
updated 7.6 years ago by ▴ 30 • written 7.6 years ago by ▴ 590
2
votes
3
replies
8.6k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 7.2 years ago by ▴ 790 • written 7.2 years ago by ▴ 120
5
votes
2
replies
8.2k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 7.3 years ago by 58k • written 7.3 years ago by ▴ 20
0
votes
3
replies
7.5k
views
[biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes
biomaRt biomaRt
updated 8.7 years ago by ▴ 540 • written 8.7 years ago by ▴ 20
1
vote
6
replies
6.3k
views
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq r biomart
updated 6.2 years ago by ★ 1.9k • written 6.2 years ago by ▴ 40
6
votes
5
replies
6.2k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 4.1 years ago by ★ 5.3k • written 4.1 years ago by ▴ 40
2
votes
4
replies
5.7k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
3.9 years ago Yuqia • 0
5
votes
19
replies
5.7k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
7.3 years ago k.askland ▴ 20
0
votes
1
reply
5.5k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 15.5 years ago by ▴ 110 • written 15.5 years ago by ★ 3.4k
2
votes
3
replies
5.1k
views
BiomaRt::getBM Error in UseMethod(filter_)
biomaRt
14 months ago suyang • 0
0
votes
2
replies
4.9k
views
biomaRt proxy issues
biomaRt charm biomaRt charm
updated 12.9 years ago by ▴ 600 • written 12.9 years ago by ▴ 60
7
votes
2
replies
4.9k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 4.0 years ago by ★ 5.3k • written 4.0 years ago by ▴ 30
1
vote
2
replies
4.8k
views
change the biomaRt host
biomaRt
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by ▴ 80
4
votes
8
replies
4.7k
views
Ensembl site unresponsive
ensembl biomart
updated 9 months ago by • 0 • written 15 months ago by ▴ 30
19
votes
4
replies
4.6k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 6.2 years ago by ▴ 140 • written 6.2 years ago by ▴ 590
9
votes
5
replies
4.5k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
6.2 years ago anchel.gonzalez • 0
21
votes
34
replies
4.5k
views
Biomart error when updating to R 4.0.2
Biomart
updated 15 months ago by ★ 5.3k • written 15 months ago by ▴ 40
0
votes
2
replies
4.4k
views
Error in UseMethod("filter_") : no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', …
ErrorinUseMethod("filter_") biomaRt
updated 13 months ago by • 0 • written 13 months ago by • 0
6
votes
7
replies
4.3k
views
BiomaRt workaround when Biomart server closed
biomart
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 30
0
votes
1
reply
3.8k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 10.8 years ago by ▴ 540 • written 10.8 years ago by ▴ 140
0
votes
2
replies
3.8k
views
problem with 'biomaRt' package installation: Error in loadNamespace(i, c(lib.loc, .libPaths()))
biomaRt biomaRt
updated 9.8 years ago by ★ 8.2k • written 9.8 years ago by ▴ 60
3
votes
5
replies
3.7k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 8.4 years ago by ▴ 540 • written 8.4 years ago by ▴ 380
0
votes
4
replies
3.6k
views
biomaRt connection problems
biomaRt biomaRt
updated 11.6 years ago by 21k • written 11.6 years ago by ★ 3.4k
9
votes
4
replies
3.6k
views
How to access Emsembl plants with biomaRt
biomart
6.2 years ago naholi.alejandri ▴ 50
2
votes
4
replies
3.5k
views
Something wrong with the BioMart server
bioMart
updated 2.7 years ago by ★ 5.3k • written 2.7 years ago by • 0
0
votes
2
replies
3.5k
views
biomaRt installation error ??
biomaRt biomaRt
updated 9.6 years ago by ▴ 280 • written 9.6 years ago by ▴ 440
0
votes
2
replies
3.5k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 12.8 years ago by 13k • written 12.8 years ago by ▴ 300
0
votes
1
reply
3.5k
views
how to map choromosome location to gene ID
biomaRt biomaRt
updated 10.7 years ago by ▴ 540 • written 10.7 years ago by ▴ 140
6
votes
12
replies
3.5k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 4.8 years ago by • 0 • written 5.0 years ago by ▴ 100
0
votes
2
replies
3.4k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
6.8 years ago mrprao • 0
0
votes
7
replies
3.3k
views
Can't match on some, but not all, Illumina probe IDs using biomaRt
R biomart illumina human ht-12 v4
updated 6.1 years ago by ▴ 790 • written 6.1 years ago by • 0
0
votes
5
replies
3.2k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 5.6 years ago by ▴ 70 • written 5.6 years ago by • 0
2
votes
5
replies
3.0k
views
Error in getBM using biomaRt
biomaRt
updated 3.0 years ago by ★ 5.3k • written 3.0 years ago by ▴ 50
0
votes
5
replies
3.0k
views
BioMart connection problem
biomaRt biomaRt
11.1 years ago Paul Leo ▴ 970
11
votes
5
replies
3.0k
views
Scan error using biomart with version option
biomart
updated 4.0 years ago by ★ 5.3k • written 4.1 years ago by ▴ 40
2
votes
2
replies
2.9k
views
topGO gene names/ensembl IDs
topgo biomart deseq2 gene ontology
updated 4.7 years ago by ▴ 650 • written 4.7 years ago by ▴ 10
1
vote
2
replies
2.9k
views
biomaRt: getting start and end locations of gene on chromosome
GO biomaRt GO biomaRt
updated 12.5 years ago by 58k • written 12.5 years ago by ★ 1.1k
0
votes
4
replies
2.9k
views
RefSeq coordinates from biomaRt
biomaRt biomaRt
updated 8.2 years ago by 21k • written 8.2 years ago by ▴ 210
2
votes
2
replies
2.9k
views
biomaaRt error: Extra content at the end of the document
biomaRt biomaRt
updated 8.0 years ago by ▴ 540 • written 8.0 years ago by ▴ 240
0
votes
3
replies
2.9k
views
Working with ensembl 73 & BSGenome
Annotation BSgenome TranscriptDb biomaRt BSgenome Annotation BSgenome TranscriptDb biomaRt
updated 8.2 years ago by 15k • written 8.2 years ago by ★ 12k
3
votes
10
replies
2.8k
views
Getting a list of all tRNA encoding genes for an organism?
trna ncrna genomicfeatures featuredb biomart
updated 6.8 years ago by 15k • written 6.8 years ago by ▴ 150
0
votes
3
replies
2.8k
views
Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 11.3 years ago by ★ 7.2k • written 11.3 years ago by ▴ 170
2
votes
2
replies
2.8k
views
BiomaRt Arabidopsis genome unavailable
biomart retrive sequence
6.1 years ago oberlins ▴ 10
0
votes
3
replies
2.8k
views
biomart database version problem
Annotation biomaRt Annotation biomaRt
updated 9.4 years ago by ▴ 540 • written 9.4 years ago by ▴ 40
9
votes
9
replies
2.7k
views
biomaRt error when connecting to host
biomart host connection
updated 4.8 years ago by ★ 5.3k • written 4.8 years ago by ★ 1.5k
2
votes
1
reply
2.7k
views
biomaRt query: retrieve exon locations etc
biomaRt biomaRt
updated 9.0 years ago by ▴ 540 • written 9.0 years ago by ★ 1.1k
5
votes
5
replies
2.7k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 7.3 years ago by 21k • written 7.3 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Uniform window size for different genes by rbenel ▴ 20
Hi James, Sorry if I was unclear. I am referring to the height of the model itself, strictly speaking visualization. For publication I wo…
Comment: Macbook M1 install genefilter failed by Ryan • 0
Yes, this solution worked for me as well.
Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea by Rory Stark ★ 4.3k
Nothing too unusual, just a bug where in certain conditions the `Called` columns were being computed using the unmerged datasets. This onl…
Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k
I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…
Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k
You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…
Votes
A: What does the relative-log expression normalization mean in the deseq2 wrapper f
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
edgeR cpm() function with and without log2
edgeR cpm() function with and without log2
A: edgeR cpm() function with and without log2
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