Showing : biomart • reset
13
votes
8
replies
14k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 8.3 years ago by ▴ 790 • written 8.3 years ago by ▴ 90
2
votes
4
replies
12k
views
biomartRt: convert mouse gene symbol return multiple human gene symbol
biomart gene symbol
updated 7.6 years ago by ▴ 760 • written 7.7 years ago by ▴ 20
21
votes
24
replies
11k
views
Problem with biomart's listMarts function
biomart bug
updated 6.8 years ago by ▴ 470 • written 7.2 years ago by ★ 2.0k
4
votes
8
replies
9.8k
views
Ensembl site unresponsive
ensembl biomart
updated 21 months ago by • 0 • written 2.3 years ago by ▴ 40
2
votes
3
replies
9.6k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 8.3 years ago by ▴ 790 • written 8.3 years ago by ▴ 120
5
votes
2
replies
9.1k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 8.3 years ago by 62k • written 8.3 years ago by ▴ 20
0
votes
2
replies
8.9k
views
biomaRt proxy issues
biomaRt biomaRt
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 650
0
votes
3
replies
8.4k
views
[biomaRt] Finding Orthologs genes between Human and Mouse - problem with getBM to retrieve some attributes
biomaRt biomaRt
updated 9.7 years ago by ▴ 540 • written 9.7 years ago by ▴ 20
2
votes
4
replies
8.4k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
5.0 years ago • updated 4.9 years ago Yuqia • 0
1
vote
6
replies
7.6k
views
Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
rnaseq r biomart
updated 7.2 years ago by ★ 2.0k • written 7.2 years ago by ▴ 40
1
vote
4
replies
7.6k
views
biomaRt has encountered an unexpected server error.
biomaRt
updated 8 months ago by • 0 • written 2.8 years ago by • 0
1
vote
2
replies
7.5k
views
Error in UseMethod("filter_") : no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', …
ErrorinUseMethod("filter_") biomaRt
updated 2.2 years ago by • 0 • written 2.2 years ago by ▴ 10
6
votes
5
replies
6.9k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 5.2 years ago by ★ 5.9k • written 5.2 years ago by ▴ 40
2
votes
3
replies
6.8k
views
BiomaRt::getBM Error in UseMethod(filter_)
biomaRt
2.3 years ago • updated 2.2 years ago suyang • 0
5
votes
19
replies
6.4k
views
biomaRt SNP (rs ID) -to-HGNC symbol mapping question
biomart
8.3 years ago k.askland ▴ 20
21
votes
34
replies
6.0k
views
Biomart error when updating to R 4.0.2
Biomart
updated 2.3 years ago by ★ 5.9k • written 2.3 years ago by ▴ 40
0
votes
1
reply
5.7k
views
Unable to use biomaRt because Rcurl doesn't pick up my proxy server address
biomaRt biomaRt
updated 16.6 years ago by ▴ 110 • written 16.6 years ago by ★ 3.4k
2
votes
4
replies
5.5k
views
Something wrong with the BioMart server
bioMart
updated 3.7 years ago by ★ 5.9k • written 3.7 years ago by • 0
1
vote
2
replies
5.4k
views
change the biomaRt host
biomaRt
updated 7.2 years ago by ▴ 140 • written 7.2 years ago by ▴ 80
3
votes
2
replies
5.3k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 2.5 years ago by 16k • written 2.5 years ago by • 0
7
votes
2
replies
5.3k
views
getBM error: The query to the BioMart webservice returned an invalid result
biomart
updated 5.0 years ago by ★ 5.9k • written 5.0 years ago by ▴ 30
9
votes
5
replies
5.2k
views
Error: This function only works when used with the ensembl BioMart.
biomart error
7.2 years ago anchel.gonzalez • 0
0
votes
2
replies
5.1k
views
biomaRt proxy issues
biomaRt charm biomaRt charm
updated 14.0 years ago by ▴ 600 • written 14.0 years ago by ▴ 60
0
votes
1
reply
5.0k
views
using BioMart to query UniProt identifiers
GO biomaRt GO biomaRt
updated 11.8 years ago by ▴ 540 • written 11.8 years ago by ▴ 140
19
votes
4
replies
4.9k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 7.2 years ago by ▴ 140 • written 7.2 years ago by ▴ 650
6
votes
7
replies
4.7k
views
BiomaRt workaround when Biomart server closed
biomart
updated 7.2 years ago by • 0 • written 7.2 years ago by ▴ 30
1
vote
8
replies
4.6k
views
BioMart: curl option when using getBM in loop
curl biomart getBM Tutorial
updated 2.9 years ago by 62k • written 2.9 years ago by ▴ 10
0
votes
2
replies
4.4k
views
problem with 'biomaRt' package installation: Error in loadNamespace(i, c(lib.loc, .libPaths()))
biomaRt biomaRt
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ▴ 60
4
votes
7
replies
4.2k
views
convert featureCounts's gene ID to entrez gene id
biomart rsubread gencode
updated 4.3 years ago by 62k • written 4.3 years ago by ▴ 20
3
votes
5
replies
4.2k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 9.4 years ago by ▴ 540 • written 9.4 years ago by ▴ 380
0
votes
2
replies
4.1k
views
How to go from affymetrix to Ensembl transcript IDs
hgu95av2 affy biomaRt hgu95av2 affy biomaRt
updated 13.8 years ago by 13k • written 13.8 years ago by ▴ 300
6
votes
12
replies
4.1k
views
Error in getBM of biomaRt package
biomaRt getBM
updated 5.8 years ago by • 0 • written 6.0 years ago by ▴ 110
9
votes
4
replies
4.1k
views
How to access Emsembl plants with biomaRt
biomart
7.2 years ago naholi.alejandri ▴ 50
0
votes
2
replies
4.0k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
7.9 years ago mrprao • 0
0
votes
1
reply
3.9k
views
how to map choromosome location to gene ID
biomaRt biomaRt
updated 11.7 years ago by ▴ 540 • written 11.7 years ago by ▴ 140
0
votes
2
replies
3.9k
views
biomaRt installation error ??
biomaRt biomaRt
updated 10.6 years ago by ▴ 280 • written 10.6 years ago by ▴ 440
3
votes
1
reply
3.9k
views
How to find rsID with biomaRt in R
biomaRt
updated 23 months ago by ★ 5.9k • written 23 months ago by ▴ 10
1
vote
2
replies
3.9k
views
biomaRt: getting start and end locations of gene on chromosome
GO biomaRt GO biomaRt
updated 13.6 years ago by 62k • written 13.6 years ago by ★ 1.1k
22
votes
14
replies
3.8k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt RNASeqData R
updated 9 months ago by • 0 • written 10 months ago by ▴ 50
0
votes
4
replies
3.8k
views
biomaRt connection problems
biomaRt biomaRt
updated 12.6 years ago by 21k • written 12.6 years ago by ★ 3.4k
2
votes
11
replies
3.8k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 2.0 years ago by ★ 5.9k • written 2.4 years ago by • 0
2
votes
5
replies
3.8k
views
Error in getBM using biomaRt
biomaRt
updated 4.0 years ago by ★ 5.9k • written 4.0 years ago by ▴ 50
0
votes
7
replies
3.8k
views
Can't match on some, but not all, Illumina probe IDs using biomaRt
R biomart illumina human ht-12 v4
updated 7.2 years ago by ▴ 790 • written 7.2 years ago by • 0
0
votes
5
replies
3.7k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 6.6 years ago by ▴ 70 • written 6.6 years ago by • 0
2
votes
2
replies
3.5k
views
topGO gene names/ensembl IDs
topgo biomart deseq2 gene ontology
updated 5.7 years ago by ▴ 710 • written 5.7 years ago by ▴ 10
6
votes
5
replies
3.5k
views
biomaRt Ensembl gene ID to multiple HGNC symbol
ensembl symbol hgnc biomart
updated 3.8 years ago by 62k • written 3.8 years ago by ▴ 80
0
votes
3
replies
3.5k
views
biomart database version problem
Annotation biomaRt Annotation biomaRt
updated 10.4 years ago by ▴ 540 • written 10.4 years ago by ▴ 40
0
votes
5
replies
3.4k
views
BioMart connection problem
biomaRt biomaRt
12.2 years ago • updated 12.1 years ago Paul Leo ▴ 970
3
votes
2
replies
3.4k
views
biomaRt question for GO term search
biomaRt GO term
updated 3.6 years ago by ★ 5.9k • written 3.6 years ago by • 0
3
votes
10
replies
3.4k
views
Getting a list of all tRNA encoding genes for an organism?
trna ncrna genomicfeatures featuredb biomart
updated 7.8 years ago by 16k • written 7.9 years ago by ▴ 180
50 results • Page 1 of 1
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Replies
Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user) by lalanis1 • 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma by Gordon Smyth 47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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