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8.3k

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batch effect combat limma block

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by eleonoregravier ▴ 70

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5.5k

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limma microarray block paired linear model

9.4 years ago vas ▴ 40

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3.1k

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limma covariate block paired samples technical replicates

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by eleonoregravier ▴ 70

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2.7k

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batch effect Coeficents non estimable block random effects limma design matrix

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by mheydarpour ▴ 10

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2.0k

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limma sva block

updated 2.1 years ago by stuartthafass • 0 • written 9.5 years ago by kodream ▴ 20

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1.8k

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limma microarray block

updated 7 months ago by Gordon Smyth 50k • written 5.2 years ago by tleona3 • 0

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1.8k

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limma block design and contrast matrix

8.8 years ago choofd • 0

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1.5k

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deseq2 block pca

7.8 years ago akp • 0

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1.3k

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limma roast mroast block

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by barbara.shih • 0

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1.3k

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time course block batch effect WGCNA

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by xie186 • 0

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1.3k

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missmethyl diffvar design matrix limma block

updated 5.9 years ago by lhuang7 ▴ 50 • written 6.8 years ago by Simone ▴ 180

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990

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diffbind block regression deseq2 chipseq

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.5 years ago by melnuesch ▴ 10

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936

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limma BatchEffect duplicatecorrelation block batch

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by Katherine • 0

13 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0