Bioconductor Block

Showing : block • reset

votes

replies

1.8k

views

limma microarray block

updated 7 months ago by Gordon Smyth 50k • written 5.2 years ago by tleona3 • 0

votes

replies

2.0k

views

limma sva block

updated 2.1 years ago by stuartthafass • 0 • written 9.5 years ago by kodream ▴ 20

votes

936

views

limma BatchEffect duplicatecorrelation block batch

updated 3.4 years ago by Kevin Blighe ★ 3.9k • written 3.4 years ago by Katherine • 0

votes

replies

991

views

diffbind block regression deseq2 chipseq

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.5 years ago by melnuesch ▴ 10

votes

1.3k

views

missmethyl diffvar design matrix limma block

updated 5.9 years ago by lhuang7 ▴ 50 • written 6.8 years ago by Simone ▴ 180

vote

replies

2.7k

views

batch effect Coeficents non estimable block random effects limma design matrix

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by mheydarpour ▴ 10

votes

replies

1.3k

views

time course block batch effect WGCNA

updated 7.1 years ago by Michael Love 41k • written 7.1 years ago by xie186 • 0

votes

replies

1.3k

views

limma roast mroast block

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by barbara.shih • 0

vote

replies

1.5k

views

deseq2 block pca

7.8 years ago akp • 0

votes

replies

3.1k

views

limma covariate block paired samples technical replicates

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by eleonoregravier ▴ 70

votes

replies

8.3k

views

batch effect combat limma block

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by eleonoregravier ▴ 70

votes

replies

1.8k

views

limma block design and contrast matrix

8.8 years ago choofd • 0

votes

replies

5.5k

views

limma microarray block paired linear model

9.4 years ago vas ▴ 40

13 results • Page 1 of 1

Recent ...

Replies

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length