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cdf
•
reset
1
vote
4
replies
5.2k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure
cdf
probe
affy
Infrastructure
cdf
probe
affy
16.8 years ago
Hans-Ulrich Klein
▴ 330
0
votes
4
replies
4.9k
views
Bioconductor with Affymetrix Mouse Gene 1.0 ST
Annotation
cdf
PROcess
safe
Annotation
cdf
PROcess
safe
13.9 years ago
M. Emily Merrill
▴ 20
3
votes
7
replies
4.8k
views
miRNA microarray analysis
microarray
cdf
updated 9.9 years ago by
Gordon Smyth
52k • written 9.9 years ago by
aswathym
▴ 10
0
votes
1
reply
4.7k
views
Error in getCdfInfo(object)
cdf
cdf
updated 14.9 years ago by
James W. MacDonald
68k • written 14.9 years ago by
Arun A K
▴ 20
0
votes
8
replies
4.5k
views
error ReadAffy
Arabidopsis thaliana
cdf
affy
gcrma
PROcess
oligo
xps
Arabidopsis thaliana
cdf
affy
xps
updated 6.9 years ago by
joseph.a.white1
• 0 • written 11.0 years ago by
nooshin
▴ 300
0
votes
19
replies
4.2k
views
Analysis and annotation (full) of Affymetrix Mouse Exon 1.0 ST arrays
Annotation
cdf
Annotation
cdf
updated 12.7 years ago by
James W. MacDonald
68k • written 12.7 years ago by
Andreas Heider
▴ 340
0
votes
2
replies
4.0k
views
justRMA couldn't obtain CDF environment
cdf
cdf
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
Li Liu
▴ 100
0
votes
6
replies
3.7k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 17.5 years ago by
Weiyin Zhou
▴ 220 • written 17.5 years ago by
Jenny Drnevich
★ 2.2k
0
votes
3
replies
3.6k
views
Installation of XCMS / mzR failed
cdf
xcms
BiocInstaller
cdf
xcms
BiocInstaller
updated 12.6 years ago by
James W. MacDonald
68k • written 12.6 years ago by
Johannes Raffler
▴ 20
1
vote
3
replies
3.3k
views
How to analyse clariom d human files
limma
pdinfobuilder
affy
cdf
7.9 years ago
yusuf.khan
▴ 10
0
votes
1
reply
3.3k
views
Array Express HuGene-1_1-st-v1 CDF problem
cdf
microarray
affy
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
mlyall
• 0
1
vote
4
replies
3.2k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA
Microarray
cdf
makecdfenv
miRNA
Microarray
cdf
makecdfenv
updated 11.1 years ago by
James W. MacDonald
68k • written 11.1 years ago by
Guest User
★ 13k
0
votes
2
replies
3.2k
views
Error in function (classes, fdef, mtable)
cdf
genefilter
reposTools
gcrma
matchprobes
affyPLM
simpleaffy
affyio
cdf
genefilter
updated 18.2 years ago by
Seth Falcon
★ 7.4k • written 18.3 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
10
replies
3.1k
views
RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene
Microarray
Normalization
cdf
oligo
DTA
Microarray
Normalization
cdf
oligo
DTA
updated 15.0 years ago by
Benilton Carvalho
★ 4.3k • written 15.0 years ago by
Mikhail Pachkov
▴ 110
0
votes
9
replies
3.1k
views
frma and alternative CDFs
GO
cdf
frma
BRAIN
GO
cdf
frma
BRAIN
updated 10.6 years ago by
Matthew McCall
▴ 830 • written 10.6 years ago by
Guest User
★ 13k
2
votes
2
replies
3.1k
views
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy
cdf
.cel
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
maxime.vanhaeverbeke
• 0
0
votes
8
replies
3.1k
views
Error in setQCEnvironment(cdfn)
cdf
cdf
updated 12.5 years ago by
James W. MacDonald
68k • written 12.5 years ago by
suparna mitra
▴ 290
2
votes
4
replies
3.0k
views
makePdInfoPackage for Primeview arrays
BiocViews
Annotation
Cancer
Organism
cdf
probe
affy
biocViews
BiocViews
BiocViews
Cancer
updated 11.7 years ago by
cstrato
★ 3.9k • written 11.7 years ago by
Max Kauer
▴ 140
0
votes
0
replies
3.0k
views
[Fwd: Error (affy) loading 'listcel' and 'CDF.example']
cdf
affy
cdf
affy
22.6 years ago
Carleton Garrett
▴ 80
0
votes
2
replies
3.0k
views
Processing array with R
cdf
software error
affy
R
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Charlie
• 0
0
votes
1
reply
2.9k
views
Analysis of Human Gene 1.1 ST Array
Microarray
cdf
affy
PROcess
oligo
xps
Microarray
cdf
affy
PROcess
oligo
xps
updated 11.3 years ago by
James W. MacDonald
68k • written 11.3 years ago by
Jerry Cholo
▴ 190
0
votes
5
replies
2.9k
views
Load CDF files for Affymetrix ST 2.0 microarrays
microarray
oligo
cdf
customcdf
updated 9.2 years ago by
Guido Hooiveld
★ 4.1k • written 9.2 years ago by
Nathaniel
▴ 20
0
votes
1
reply
2.9k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray
Annotation
hgu133a
hgu133plus2
cdf
Microarray
Annotation
hgu133a
hgu133plus2
updated 11.2 years ago by
cstrato
★ 3.9k • written 11.2 years ago by
Rahmatallah, Yasir
▴ 10
0
votes
3
replies
2.9k
views
Affymetrix CEL files
cdf
GWASTools
cdf
GWASTools
updated 11.8 years ago by
James W. MacDonald
68k • written 11.8 years ago by
Stephanie M. Gogarten
▴ 890
0
votes
5
replies
2.8k
views
GSVA questions
cdf
GSVA
cdf
GSVA
11.5 years ago
Guest User
★ 13k
0
votes
2
replies
2.7k
views
affy hugene 2.1 st
cdf
cdf
updated 12.5 years ago by
Guest User
★ 13k • written 12.5 years ago by
Dario Greco
▴ 310
0
votes
2
replies
2.7k
views
Importing CDF file for custom array using makecdfenv
cdf
affy
makecdfenv
cdf
affy
makecdfenv
updated 18.5 years ago by
Michal Okoniewski
▴ 120 • written 18.5 years ago by
Ann Hess
▴ 340
0
votes
6
replies
2.7k
views
Library installation: odd error
cdf
probe
cdf
probe
updated 13.6 years ago by
Steve Lianoglou
★ 13k • written 13.6 years ago by
Michael Bauer
▴ 50
0
votes
9
replies
2.7k
views
using frma and brainarray cdf on exon arrays
cdf
affy
PROcess
oligo
xps
frma
cdf
affy
PROcess
oligo
xps
frma
updated 11.1 years ago by
Stephen Piccolo
▴ 600 • written 11.1 years ago by
Ty Thomson
▴ 100
0
votes
13
replies
2.7k
views
arrayQualityMetrics error and question
cdf
arrayQualityMetrics
cdf
arrayQualityMetrics
updated 13.0 years ago by
Wolfgang Huber
★ 13k • written 13.0 years ago by
David Westergaard
▴ 280
0
votes
8
replies
2.7k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA
GO
cdf
affy
arrayQualityMetrics
miRNA
GO
cdf
affy
arrayQualityMetrics
updated 12.3 years ago by
James W. MacDonald
68k • written 12.3 years ago by
Stephen Turner
▴ 290
0
votes
12
replies
2.6k
views
Bioconductor - hugene10stv1cdf not available
cdf
cdf
14.8 years ago
Christoph Knapp
▴ 70
0
votes
12
replies
2.6k
views
justRMA?
cdf
probe
cdf
probe
updated 12.2 years ago by
James W. MacDonald
68k • written 12.2 years ago by
Bhargavi Duvvuri
▴ 70
0
votes
6
replies
2.6k
views
CDF file for Mouse Gene 1.1 ST Array
cdf
cdf
updated 14.2 years ago by
Pascal Gellert
▴ 80 • written 14.2 years ago by
Lucia Peixoto
▴ 330
0
votes
2
replies
2.6k
views
make.cdf.package Error in copySubstitute
GO
cdf
Biobase
affy
GO
cdf
Biobase
affy
updated 10.9 years ago by
James W. MacDonald
68k • written 10.9 years ago by
matthew vitalone
▴ 30
0
votes
4
replies
2.5k
views
HGU95a and HGU95av2 with gcrma
hgu95a
hgu95av2
cdf
gcrma
hgu95a
hgu95av2
cdf
gcrma
updated 20.3 years ago by
Wolfgang Huber
★ 13k • written 20.3 years ago by
Vincent Detours
▴ 80
0
votes
4
replies
2.5k
views
.cel file processing is not working for an old array
cdf
PROcess
cdf
PROcess
updated 10.6 years ago by
James W. MacDonald
68k • written 10.6 years ago by
Maria Kesa
▴ 30
0
votes
1
reply
2.5k
views
affy - Anotation of Afymetrix PrimeView chipe
cdf
probe
affy
limma
cdf
probe
affy
limma
updated 11.3 years ago by
James W. MacDonald
68k • written 11.3 years ago by
Adam Olejnik
▴ 10
0
votes
0
replies
2.5k
views
comparing affymetrix and agilent microarray data
cdf
probe
affy
cdf
probe
affy
15.7 years ago
Jarek Bryk
▴ 110
0
votes
4
replies
2.4k
views
affyPara
cdf
affy
affyPara
cdf
affy
affyPara
14.4 years ago
danieladna
▴ 110
0
votes
2
replies
2.4k
views
Installing packages on R v2.13.2, OSX multiple warning messages
Annotation
cdf
probe
affy
gcrma
Annotation
cdf
probe
affy
gcrma
updated 13.4 years ago by
James W. MacDonald
68k • written 13.4 years ago by
Guest User
★ 13k
0
votes
3
replies
2.4k
views
ReadAffy Error
Annotation
ExperimentData
cdf
affy
affyio
Annotation
ExperimentData
cdf
affy
affyio
updated 17.5 years ago by
Sylvia.Merk@ukmuenster.de
▴ 60 • written 17.5 years ago by
Markus Schmidberger
▴ 380
0
votes
2
replies
2.4k
views
problem installing 'GLAD' package
cdf
GLAD
cdf
GLAD
14.2 years ago
Shenglin Zheng
▴ 20
0
votes
5
replies
2.4k
views
Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing
cdf
oligo
oneChannelGUI
Preprocessing
cdf
oligo
oneChannelGUI
updated 15.3 years ago by
Benilton Carvalho
★ 4.3k • written 15.3 years ago by
Javier Pérez Florido
▴ 840
0
votes
1
reply
2.4k
views
GWASTools
cdf
GWASTools
cdf
GWASTools
11.5 years ago
Stephanie M. Gogarten
▴ 890
0
votes
5
replies
2.4k
views
Affymetrix HT HG-U133+ PM Array Plate annotation data
Annotation
cdf
probe
Annotation
cdf
probe
updated 15.2 years ago by
Marc Carlson
★ 7.2k • written 15.2 years ago by
giacomo.tuana@unimib.it
▴ 40
0
votes
12
replies
2.3k
views
Some Genefilter questions
GO
Survival
cdf
genefilter
geneplotter
tkWidgets
affy
affydata
widgetTools
gcrma
affyPLM
updated 18.2 years ago by
rgentleman
★ 5.5k • written 18.2 years ago by
Amy Mikhail
▴ 460
0
votes
1
reply
2.3k
views
CDF environment missing for HuGene-1_0-st-v1
cdf
cdf
updated 14.9 years ago by
James W. MacDonald
68k • written 14.9 years ago by
Legaie, Roxane
▴ 20
0
votes
4
replies
2.3k
views
topGO problem
GO
cdf
affy
topGO
GO
cdf
affy
topGO
16.4 years ago
Iain Gallagher
▴ 930
0
votes
2
replies
2.3k
views
Cannot open compressed file
Cancer
cdf
Cancer
cdf
updated 21.3 years ago by
rgentleman
★ 5.5k • written 21.3 years ago by
Simon, Richard NIH/NCI
▴ 20
50 results • Page
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Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
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Thank you
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Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
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We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
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