Showing : cdf • reset
0
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977
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How to remove some probes from one probeset in the begining?
cdf probe cdf probe
17.7 years ago pkuonline ▴ 30
0
votes
1
reply
1.3k
views
Normalizing two different platforms
cdf affy gcrma cdf affy gcrma
updated 17.7 years ago by ★ 6.5k • written 17.7 years ago by ▴ 80
0
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1
reply
995
views
gcrma with hgu133a and hgu133a2
cdf probe gcrma cdf probe gcrma
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 40
0
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3
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1.2k
views
Problem with setQCEnvironment
cdf affy cdf affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 40
0
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1
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1.3k
views
Help needed with aroma.affymetrix package to extract copy-numbers
Normalization cdf GLAD Normalization cdf GLAD
updated 17.7 years ago by ★ 2.4k • written 17.7 years ago by ▴ 270
0
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0
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1.3k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene 1.0 ST Array
Microarray cdf probe affy convert Microarray cdf probe affy convert
17.7 years ago Fang, Hong* ▴ 30
0
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1
reply
813
views
Restore lost mm probes in an altcdfenv?
cdf probe cdf probe
updated 17.7 years ago by ▴ 950 • written 17.7 years ago by ▴ 10
0
votes
0
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992
views
EBImage installation error
cdf EBImage cdf EBImage
17.7 years ago Klaus-Peter Pleissner ▴ 70
0
votes
1
reply
1.2k
views
transferring AffyBatch object and 64 bit R
cdf affy cdf affy
updated 17.7 years ago by ▴ 730 • written 17.7 years ago by ▴ 90
0
votes
4
replies
1.2k
views
MBNI CDF
cdf cdf
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 310
0
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3
replies
1.5k
views
arrayQualityMetrics
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 17.9 years ago by ▴ 280 • written 17.9 years ago by ▴ 270
0
votes
1
reply
928
views
Affy Human Gene ST1.0 cdf?
cdf cdf
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 320
0
votes
0
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1.2k
views
Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
17.9 years ago Naira Naouar ▴ 140
0
votes
3
replies
2.1k
views
CDF for Mouse gene 1.0 ST
cdf cdf
updated 18.0 years ago by ★ 2.4k • written 18.0 years ago by ▴ 320
0
votes
1
reply
988
views
unclear on error in affxparser
cdf affxparser cdf affxparser
updated 18.0 years ago by ★ 6.5k • written 18.0 years ago by ▴ 210
0
votes
2
replies
998
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 18.0 years ago by ▴ 120 • written 18.0 years ago by ▴ 10
0
votes
0
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1.0k
views
makePDpackage: Problem loading PD package in, oligo:read.celfiles function
cdf oligo cdf oligo
18.0 years ago Matt Settles ▴ 10
0
votes
1
reply
1.2k
views
QC Parameter File error
cdf cdf
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 160
0
votes
2
replies
917
views
hugene10stv1probe?
cdf probe cdf probe
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 50
0
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0
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1.4k
views
AffyExpress: AffyQA incompatible with simpleaffy 2.14.04?
cdf simpleaffy AffyExpress cdf simpleaffy AffyExpress
18.1 years ago Stefan Thomsen ▴ 50
0
votes
1
reply
1.6k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 18.1 years ago by ★ 1.1k • written 18.1 years ago by ▴ 50
0
votes
1
reply
1.1k
views
request for simple usage of probe level normalisations
cdf gcrma oligo pdInfoBuilder cdf gcrma oligo pdInfoBuilder
updated 18.1 years ago by ★ 6.5k • written 18.1 years ago by ▴ 320
0
votes
5
replies
1.2k
views
Making a PD package for Oligo
cdf oligo makePlatformDesign cdf oligo makePlatformDesign
updated 18.1 years ago by ★ 4.3k • written 18.1 years ago by ▴ 40
0
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3
replies
1.2k
views
Arabidopsis thaliana cdf ath1121501
cdf cdf
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 140
0
votes
0
replies
1.3k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
18.1 years ago Richard Friedman ★ 2.0k
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0
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1.0k
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
18.1 years ago Martin Morgan 25k
0
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1
reply
1.3k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.1 years ago by ★ 1.2k • written 18.1 years ago by ★ 2.4k
0
votes
1
reply
1.0k
views
GCRMA works for my updated cdf and probesequence files.
cdf probe gcrma cdf probe gcrma
updated 18.1 years ago by ▴ 450 • written 18.1 years ago by ▴ 130
0
votes
1
reply
898
views
help for canine 2.0 arrays
cdf affy cdf affy
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 10
0
votes
0
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1.3k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
18.1 years ago Yan Zhang ▴ 130
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2
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1.1k
views
affTableAnn error
hgu133a2 moe430a mouse430a2 cdf limma matchprobes hgu133a2 moe430a mouse430a2 cdf limma
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ★ 2.0k
0
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0
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973
views
how to install updated CDF package and probe package in R to run GCRMA?
cdf probe gcrma cdf probe gcrma
18.2 years ago Yan Zhang ▴ 130
0
votes
3
replies
2.6k
views
ReadAffy Error
Annotation ExperimentData cdf affy affyio Annotation ExperimentData cdf affy affyio
updated 18.2 years ago by ▴ 60 • written 18.2 years ago by ▴ 380
0
votes
4
replies
1.7k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 20
0
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6
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4.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 18.2 years ago by ▴ 220 • written 18.2 years ago by ★ 2.2k
0
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0
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2.2k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
18.2 years ago Min Wook Kim ▴ 20
0
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1
reply
1.3k
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 510
0
votes
3
replies
1.9k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 10
0
votes
7
replies
2.1k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 380
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votes
1
reply
1.5k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 18.2 years ago by ▴ 450 • written 18.2 years ago by ▴ 450
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votes
2
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1.6k
views
How to get probeset ID
rae230a cdf affy gcrma matchprobes rae230a cdf affy gcrma matchprobes
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 310
0
votes
2
replies
1.8k
views
Using a custom CDF file
cdf cdf
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 120
0
votes
1
reply
1.5k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 380
0
votes
2
replies
862
views
Bug in probeNames()
Annotation cdf Annotation cdf
updated 18.3 years ago by ▴ 950 • written 18.3 years ago by ▴ 630
0
votes
3
replies
1.2k
views
Problems with gcrma using latest version of R and Bioconductor
Normalization cdf gcrma Normalization cdf gcrma
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 60
0
votes
2
replies
1.4k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 18.3 years ago by ▴ 50 • written 18.3 years ago by ▴ 290
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votes
5
replies
2.3k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 50
0
votes
0
replies
1.3k
views
Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
18.3 years ago Dave Jacoby ▴ 20
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9
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2.4k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 90
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1
reply
1.2k
views
hgu133a and gnGNF1Ba
Microarray Annotation hgu133a cdf Biobase affy PROcess Microarray Annotation hgu133a cdf
updated 18.3 years ago by ▴ 830 • written 18.3 years ago by ★ 3.4k
927 results • Page 10 of 19
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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