Bioconductor Celegans

Showing : celegans • reset

votes

494

views

Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 19 months ago by James W. MacDonald 66k • written 19 months ago by Enzo.Scifo • 0

vote

995

views

BSgenome Celegans

updated 2.2 years ago by Hervé Pagès 16k • written 2.2 years ago by Tsung-Han • 0

vote

replies

1.7k

views

Gviz celegans

updated 6.4 years ago by Robert Ivanek ▴ 730 • written 6.4 years ago by alex.gos90 ▴ 10

votes

replies

1.4k

views

biomaRt bioconductor celegans annotation

updated 6.4 years ago by Mike Smith ★ 6.5k • written 6.4 years ago by clarisbaby • 0

votes

replies

770

views

celegans affy convert celegans affy convert

updated 13.8 years ago by Marc Carlson ★ 7.2k • written 13.8 years ago by Julie Zhu ★ 4.3k

votes

989

views

Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans

updated 14.4 years ago by Sean Davis 21k • written 14.4 years ago by Paul Shannon ★ 1.1k

votes

958

views

celegans Biostrings celegans Biostrings

updated 15.6 years ago by Hervé Pagès 16k • written 15.6 years ago by Elizabeth Purdom ▴ 210

votes

replies

902

views

celegans celegans

17.2 years ago Gordon Smyth 51k

votes

replies

711

views

Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy

20.7 years ago James W. MacDonald 66k

9 results • Page 1 of 1

Recent ...

Replies

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

Awards • All