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champ
•
reset
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 10 weeks ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
3
votes
7
replies
5.4k
views
error with champ.load
champ
written 6.5 years ago by
o.giannakopoulou
▴ 10
2
votes
6
replies
1.4k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 4 weeks ago by
Tim Peters
▴ 180 • written 5 months ago by
rae.alshammari
▴ 10
2
votes
7
replies
2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray
methylationArrayAnalysis
ChAMP
updated 6 months ago by
dorota.komar
• 0 • written 3.4 years ago by
Ankit
▴ 20
2
votes
1
reply
585
views
ChAMP can't be found in Bioc3.18?
ChAMP
5 months ago
ramonfallon
▴ 20
2
votes
5
replies
1.9k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 7 weeks ago by
James W. MacDonald
65k • written 12 months ago by
angel
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 19 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
1
vote
2
replies
158
views
Error in champ.load(): The following specified files do not exist
ChAMP
18 days ago
Sherin
• 0
1
vote
1
reply
297
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 10 weeks ago by
James W. MacDonald
65k • written 10 weeks ago by
david.cheishvili
• 0
1
vote
16
replies
3.3k
views
error in ChAMP loading file
ChAMP
updated 7 weeks ago by
hortense96
• 0 • written 17 months ago by
Giulia
• 0
1
vote
4
replies
235
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 14 days ago by
James W. MacDonald
65k • written 18 days ago by
Mirella Aurora
• 0
0
votes
3
replies
722
views
Error in champ.load() function
ChAMP
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Monalisa
• 0
0
votes
2
replies
1.0k
views
error when using M-values in ChAMP
ChAMP
updated 5 weeks ago by
hortense96
• 0 • written 6.3 years ago by
a.mcneill
• 0
0
votes
2
replies
663
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 3 months ago by
shuo
• 0 • written 3 months ago by
ChunkyJones
• 0
0
votes
7
replies
1.8k
views
error with champ.load
ChAMP
champ
methylation
updated 8 months ago by
mike
• 0 • written 4.1 years ago by
jkong
• 0
0
votes
2
replies
713
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
Matilda
• 0
0
votes
0
replies
157
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
3 months ago
Thalita
• 0
0
votes
2
replies
2.0k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP
methylation
BMIQ
updated 5 months ago by
peter.brederlo
• 0 • written 5.0 years ago by
moldach
▴ 20
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 11 months ago by
hfbarrerat
• 0 • written 3.2 years ago by
Bethan
• 0
0
votes
0
replies
216
views
how to solve this error?
ChAMPdata
ChAMP
11 weeks ago
Meghana
• 0
0
votes
7
replies
639
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
486342583
• 0
0
votes
3
replies
666
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by
Keasiykan
• 0
22 results • Page
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Answer: How to save the DEXSeq results
by
Michael Love
41k
If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…
Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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