Bioconductor Chimera

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prettyPrint Chimera

updated 8.3 years ago by mrp • 0 • written 8.7 years ago by anders • 0

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2.2k

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chimera IRanges

updated 9.9 years ago by raffaele calogero ▴ 500 • written 10.4 years ago by kelly.rabionet ▴ 10

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3.5k

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fusion genes chimera star

updated 10.7 years ago by richa_r • 0 • written 11.0 years ago by am26 • 0

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2.9k

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chimera STAR

updated 10.7 years ago by rcaloger ▴ 500 • written 10.8 years ago by wresch • 0

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2.1k

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rnaseq mirna onechannelgui chimera News

10.8 years ago raffaele calogero ▴ 500

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2.2k

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chimera chimera

updated 17.3 years ago by Thomas Girke ★ 1.7k • written 17.3 years ago by Paul Shannon ★ 1.1k

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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