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chimera
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Problem with prettyPrint (Chimera)
prettyPrint
Chimera
updated 6.8 years ago by
mrp
• 0 • written 7.2 years ago by
anders
• 0
1
vote
4
replies
1.7k
views
chimera error after update to R 3.2
chimera
IRanges
updated 8.4 years ago by
raffaele calogero
▴ 500 • written 8.9 years ago by
kelly.rabionet
▴ 10
1
vote
5
replies
2.2k
views
Single end STAR Chimeric.out.junction fails to read with chimera::importFusionData
chimera
STAR
updated 9.2 years ago by
rcaloger
▴ 500 • written 9.3 years ago by
wresch
• 0
0
votes
0
replies
1.8k
views
News:
RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq
mirna
onechannelgui
chimera
News
9.3 years ago
raffaele calogero
▴ 500
0
votes
5
replies
2.9k
views
Problem Importing STAR fusion data into chimera
fusion genes
chimera
star
updated 9.2 years ago by
richa_r
• 0 • written 9.5 years ago by
am26
• 0
0
votes
1
reply
1.8k
views
molecular viz tools (eg, PyMol) and R?
chimera
chimera
updated 15.8 years ago by
Thomas Girke
★ 1.7k • written 15.8 years ago by
Paul Shannon
★ 1.1k
6 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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