Bioconductor Chromosome

Showing : chromosome • reset

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1.5k

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gene chromosome proteincodinggene

2.6 years ago Liliian • 0

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2.8k

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GenomicRanges split chromosome TxDb

updated 3.9 years ago by Hervé Pagès 16k • written 3.9 years ago by jon.klonowski ▴ 40

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16k

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SNP rs id Biomart Chromosome coordinates

updated 2.3 years ago by James W. MacDonald 68k • written 5.2 years ago by Mahan • 0

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1.1k

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Chromosome Annotation

updated 5.3 years ago by James W. MacDonald 68k • written 5.3 years ago by Bine ▴ 50

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1.2k

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tximport GCF feature table parsing error chromosome

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by knholm • 0

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867

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RefSeq Chromosome Mutalyzer

5.6 years ago heiko_kin ▴ 60

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790

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edgeR chromosome RNAseq

updated 5.6 years ago by swbarnes2 ★ 1.4k • written 5.6 years ago by missmoparker • 0

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1.1k

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homo sapiens chromosome

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by xchen8 • 0

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2.9k

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bsgenome chromosome reference genome

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by Nathan Sheffield ▴ 10

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3.2k

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Gviz chromosome ideogram

updated 8.7 years ago by bernatgel ▴ 150 • written 8.7 years ago by dulunar ▴ 10

10 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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