Showing : chromosome • reset
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How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
2.8 years ago Liliian • 0
3
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5
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2.9k
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Splitting a TxDB or GRanges by Chromosome
GenomicRanges split chromosome TxDb
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 40
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4
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Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 2.5 years ago by 68k • written 5.4 years ago by • 0
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4
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Genomic Annotation Package Ensembl
Chromosome Annotation
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 50
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2
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1.3k
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Parsing error creating tx2gene object for tximport
tximport GCF feature table parsing error chromosome
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
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947
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Conversion of RefSeq data to chromosomal position
RefSeq Chromosome Mutalyzer
5.8 years ago heiko_kin ▴ 60
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Differential Expression by Chromosome using edgeR
edgeR chromosome RNAseq
updated 5.8 years ago by ★ 1.4k • written 5.8 years ago by • 0
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
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What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome chromosome reference genome
updated 7.9 years ago by 16k • written 7.9 years ago by ▴ 20
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how to plot human genome chromosome Ideogram with each length by Gviz
Gviz chromosome ideogram
updated 8.9 years ago by ▴ 150 • written 8.9 years ago by ▴ 10
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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