Bioconductor Chromosome

Showing : chromosome • reset

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1.1k

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gene chromosome proteincodinggene

23 months ago Liliian • 0

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2.5k

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GenomicRanges split chromosome TxDb

updated 3.3 years ago by Hervé Pagès 16k • written 3.3 years ago by jon.klonowski ▴ 40

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14k

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SNP rs id Biomart Chromosome coordinates

updated 20 months ago by James W. MacDonald 68k • written 4.6 years ago by Mahan • 0

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1.0k

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Chromosome Annotation

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by Bine ▴ 50

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1.1k

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tximport GCF feature table parsing error chromosome

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by knholm • 0

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739

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RefSeq Chromosome Mutalyzer

5.0 years ago heiko_kin ▴ 60

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674

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edgeR chromosome RNAseq

updated 5.0 years ago by swbarnes2 ★ 1.4k • written 5.0 years ago by missmoparker • 0

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1000

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homo sapiens chromosome

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by xchen8 • 0

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2.6k

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bsgenome chromosome reference genome

updated 7.1 years ago by Hervé Pagès 16k • written 7.1 years ago by Nathan Sheffield ▴ 10

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3.0k

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Gviz chromosome ideogram

updated 8.1 years ago by bernatgel ▴ 150 • written 8.1 years ago by dulunar ▴ 10

10 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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