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chromosome
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0
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2
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1.5k
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How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
2.6 years ago
Liliian
• 0
3
votes
5
replies
2.8k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges
split
chromosome
TxDb
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
jon.klonowski
▴ 40
5
votes
4
replies
16k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 2.4 years ago by
James W. MacDonald
68k • written 5.3 years ago by
Mahan
• 0
0
votes
4
replies
1.2k
views
Genomic Annotation Package Ensembl
Chromosome
Annotation
updated 5.3 years ago by
James W. MacDonald
68k • written 5.3 years ago by
Bine
▴ 50
0
votes
2
replies
1.3k
views
Parsing error creating tx2gene object for tximport
tximport
GCF feature table
parsing error
chromosome
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
knholm
• 0
0
votes
0
replies
886
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
5.6 years ago
heiko_kin
▴ 60
1
vote
1
reply
808
views
Differential Expression by Chromosome using edgeR
edgeR
chromosome
RNAseq
updated 5.7 years ago by
swbarnes2
★ 1.4k • written 5.7 years ago by
missmoparker
• 0
0
votes
1
reply
1.1k
views
Understand the chromosome name in homo sapiens gene database
homo sapiens
chromosome
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
xchen8
• 0
2
votes
3
replies
2.9k
views
What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome
chromosome
reference genome
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
Nathan Sheffield
▴ 10
1
vote
5
replies
3.3k
views
how to plot human genome chromosome Ideogram with each length by Gviz
Gviz
chromosome
ideogram
updated 8.7 years ago by
bernatgel
▴ 150 • written 8.8 years ago by
dulunar
▴ 10
10 results • Page
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Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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