Bioconductor Chromosome

Showing : chromosome • reset

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854

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gene chromosome proteincodinggene

19 months ago Liliian • 0

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2.3k

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GenomicRanges split chromosome TxDb

updated 2.9 years ago by Hervé Pagès 16k • written 2.9 years ago by jon.klonowski ▴ 40

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12k

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SNP rs id Biomart Chromosome coordinates

updated 16 months ago by James W. MacDonald 67k • written 4.2 years ago by Mahan • 0

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919

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Chromosome Annotation

updated 4.3 years ago by James W. MacDonald 67k • written 4.3 years ago by Bine ▴ 50

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985

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tximport GCF feature table parsing error chromosome

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by knholm • 0

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653

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RefSeq Chromosome Mutalyzer

4.6 years ago heiko_kin ▴ 60

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608

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edgeR chromosome RNAseq

updated 4.6 years ago by swbarnes2 ★ 1.4k • written 4.6 years ago by missmoparker • 0

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938

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homo sapiens chromosome

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by xchen8 • 0

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2.2k

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bsgenome chromosome reference genome

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by Nathan Sheffield ▴ 10

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2.8k

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Gviz chromosome ideogram

updated 7.7 years ago by bernatgel ▴ 150 • written 7.7 years ago by dulunar ▴ 10

10 results • Page 1 of 1

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k