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1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
13.9 years ago
David Lyon
▴ 340
0
votes
5
replies
4.5k
views
probability of a point membership to a certain cluster
Classification
Classification
updated 12.3 years ago by
Steve Lianoglou
★ 13k • written 12.3 years ago by
Barbara Uszczynska
▴ 60
0
votes
5
replies
3.1k
views
DESeq2
Normalization
Classification
Clustering
DESeq
cqn
DESeq2
Normalization
Classification
cqn
updated 11.1 years ago by
Michael Love
41k • written 11.1 years ago by
Wolfgang Huber
★ 13k
0
votes
3
replies
3.0k
views
Subsetting expression sets for mass spec data - second ask
Classification
Cancer
PROcess
Classification
Cancer
PROcess
updated 11.4 years ago by
Sean Davis
21k • written 11.4 years ago by
McGee, Monnie
▴ 300
0
votes
3
replies
2.8k
views
PAMR- Package: Workflow and/or other methods
Classification
Classification
updated 11.5 years ago by
Sean Davis
21k • written 11.5 years ago by
Peter Kupfer
▴ 70
0
votes
0
replies
2.4k
views
'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray
Classification
limma
CMA
Microarray
Classification
limma
CMA
13.2 years ago
Santosh Patnaik
▴ 30
1
vote
1
reply
2.2k
views
edgeR GLM fitted values
edgeR
GLM
classification
rnaseq
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
Mattia
▴ 10
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq
Microarray
Normalization
GO
Classification
Clustering
Cancer
Mus musculus
probe
GO
11.1 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
2.0k
views
PhD Position in Bioinformatics at the University Hospital Basel, Switzerland
Microarray
Classification
Cancer
Lung
Microarray
Classification
Cancer
Lung
18.1 years ago
Florent Baty
▴ 10
0
votes
2
replies
1.7k
views
Generating random gene lists: does sample/resample generate random sets
Classification
Classification
updated 15.7 years ago by
Thomas Hampton
▴ 750 • written 15.7 years ago by
Scott Ochsner
▴ 300
0
votes
0
replies
1.7k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
18.0 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.6k
views
Options for spatial normalization? (Oliver Homann)
SNP
Microarray
Annotation
Normalization
GO
Classification
Cancer
annotate
geneplotter
SNP
17.2 years ago
Tarca, Adi
▴ 570
0
votes
4
replies
1.6k
views
RandomForest, supervised machine learning and uncertainty
GO
Classification
GO
Classification
updated 13.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.4 years ago by
January Weiner
▴ 370
1
vote
0
replies
1.6k
views
Gene names in limma Venn Diagrams
Classification
limma
Classification
limma
20.6 years ago
James Wettenhall
▴ 1000
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
6
replies
1.6k
views
ANN: Bioconductor Release 1.7 is available
aCGH
Microarray
Annotation
Classification
annotate
edd
hexbin
SAGElyzer
Rgraphviz
RMAGEML
updated 18.6 years ago by
Norman Pavelka
▴ 190 • written 18.6 years ago by
Seth Falcon
★ 7.4k
0
votes
1
reply
1.5k
views
Support vector regression
Classification
Regression
Classification
Regression
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Guest User
★ 13k
1
vote
2
replies
1.5k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification
machinelearning
microarray
multivariate
caret
updated 8.5 years ago by
Steve Lianoglou
★ 13k • written 8.5 years ago by
svlachavas
▴ 830
0
votes
1
reply
1.5k
views
Seeking assistance on ROC
Microarray
GO
Classification
ROC
graph
ASSIGN
Microarray
GO
Classification
ROC
graph
updated 14.3 years ago by
Steve Lianoglou
★ 13k • written 14.3 years ago by
Sean Davis
21k
0
votes
0
replies
1.5k
views
CMA package: variable selection with limma
Microarray
Classification
Regression
limma
CMA
Microarray
Classification
Regression
limma
15.2 years ago
Renaud Gaujoux
▴ 170
0
votes
3
replies
1.5k
views
MLSeq Mathematical Concepts
Classification
edgeR
DESeq
MLSeq
Classification
edgeR
DESeq
MLSeq
updated 10.0 years ago by
Wolfgang Huber
★ 13k • written 10.0 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
1.5k
views
Correcting for covariate (very unbalanced design)
Microarray
Classification
limma
Microarray
Classification
limma
15.5 years ago
Renaud Gaujoux
▴ 170
0
votes
0
replies
1.5k
views
Classification in Mass Spectrometry Data
Microarray
Classification
Cancer
Ovarian
PROcess
MLInterfaces
ASSIGN
Microarray
Cancer
11.5 years ago
McGee, Monnie
▴ 300
0
votes
3
replies
1.5k
views
Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification
CMA
Classification
CMA
updated 9.8 years ago by
Sean Davis
21k • written 9.8 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification
Classification
14.3 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.4k
views
Error in R package "cancerclass" with function nvalidate
cancerclass
bioconductor
machinelearning
classification
9.0 years ago
svlachavas
▴ 830
0
votes
2
replies
1.4k
views
Problems with Affy names / BGA
Classification
affy
made4
Classification
affy
made4
updated 17.4 years ago by
Aedin Culhane
▴ 510 • written 17.5 years ago by
Heike Pospisil
▴ 310
0
votes
0
replies
1.4k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics
Classification
Regression
Genetics
Classification
Regression
11.0 years ago
CAMDA 2013
▴ 30
0
votes
0
replies
1.4k
views
Overlapping ROC plots
Classification
ROC
graph
Classification
ROC
graph
11.9 years ago
Yadav Sapkota
▴ 130
0
votes
0
replies
1.3k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing
Genetics
Classification
Cancer
PROcess
Sequencing
Genetics
Classification
14.5 years ago
Reek, J.
▴ 10
0
votes
2
replies
1.3k
views
feature selection
Classification
Classification
updated 21.1 years ago by
Liaw, Andy
▴ 360 • written 21.1 years ago by
Karen.Chancellor@asu.edu
▴ 20
0
votes
0
replies
1.3k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
16.5 years ago
Ana Conesa
▴ 340
0
votes
0
replies
1.2k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
18.2 years ago
Birgit Hauer
▴ 30
0
votes
0
replies
1.2k
views
Release of Bioconductor 1.3
Microarray
Annotation
Normalization
GO
Classification
Regression
Cancer
hgu95a
cdf
probe
20.5 years ago
A.J. Rossini
▴ 810
0
votes
0
replies
1.2k
views
compare function in CMA package
Classification
CMA
Classification
CMA
14.3 years ago
Javier Pérez Florido
▴ 840
0
votes
0
replies
1.2k
views
Statistical approach to compare differentiall expressed gene lists
Microarray
Classification
Microarray
Classification
14.4 years ago
qinghua xu
▴ 110
0
votes
0
replies
1.2k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP
Microarray
Biophysics
Classification
SNP
Microarray
Biophysics
Classification
18.2 years ago
Birgit Hauer
▴ 30
1
vote
5
replies
1.2k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
5.7 years ago
Jenny.chien
• 0
0
votes
6
replies
1.2k
views
where to start?
Classification
Clustering
Category
Classification
Clustering
Category
updated 19.0 years ago by
Seth Falcon
★ 7.4k • written 19.0 years ago by
Malik Yousef
▴ 40
0
votes
0
replies
1.2k
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray
Annotation
Normalization
GO
Visualization
Classification
Clustering
Survival
GO
16.3 years ago
Ana Conesa
▴ 340
0
votes
1
reply
1.2k
views
Sample size estimation for independent validation set
Microarray
Classification
PROcess
Microarray
Classification
PROcess
updated 14.4 years ago by
qinghua xu
▴ 110 • written 14.4 years ago by
qinghua.XU@as.biomerieux.com
▴ 10
0
votes
2
replies
1.2k
views
Hierarchical clustering and shrinking centroids...
Classification
Clustering
pamr
Classification
Clustering
pamr
updated 19.9 years ago by
Stephen Henderson
★ 1.0k • written 20.0 years ago by
Tan, MinHan
▴ 180
0
votes
3
replies
1.1k
views
Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian
Classification
limma
bridge
Bayesian
Classification
limma
bridge
19.8 years ago
Gordon Smyth
50k
0
votes
0
replies
1.1k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing
Annotation
Classification
Clustering
Sequencing
Annotation
Classification
10.2 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.1k
views
Re: Classification question(Tom R. Fahland)
Classification
DOSE
Classification
DOSE
20.0 years ago
Stephen Henderson
★ 1.0k
0
votes
0
replies
1.1k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing
Microarray
Genetics
Classification
Clustering
Regression
Sequencing
Microarray
11.1 years ago
CAMDA 2013
▴ 30
0
votes
0
replies
1.1k
views
Cluster and classification research ggrad students
Classification
Classification
15.7 years ago
William Shannon
▴ 280
0
votes
1
reply
1.1k
views
Classification with large number of qualitative variables
R
classification
qualitative variables
high dimensionnal
updated 7.4 years ago by
markus.riester
▴ 130 • written 7.4 years ago by
crichard
• 0
3
votes
2
replies
1.1k
views
Using deseq2 with batch effects and classification as downstream analysis
deseq2
batch effect
classification
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
Maryam
• 0
0
votes
0
replies
1.1k
views
Courses in Practical DNA Microarray Analysis 2006
Microarray
Genetics
Pathways
Preprocessing
Classification
Cancer
Microarray
Genetics
18.3 years ago
Wolfgang Huber
★ 13k
50 results • Page
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Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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