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conda
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Reason: image not found Error: package GenomeInfoDb could not be loaded
deseq2
conda
5.6 years ago
adam.cribbs
▴ 10
1
vote
1
reply
3.6k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Daniel
• 0
1
vote
1
reply
3.4k
views
Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
6.2 years ago
jol.espinoz
▴ 40
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
jol.espinoz
▴ 40
0
votes
1
reply
1.1k
views
conda install of diffHic
diffHic
conda
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
smithgr
• 0
1
vote
1
reply
1.1k
views
diffbind installation through Conda fails
DiffBind
conda
updated 3.1 years ago by
Rory Stark
★ 5.2k • written 3.1 years ago by
Benjamin Ostendorf
▴ 90
0
votes
1
reply
1.1k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda
affyio
error
5.5 years ago
benjamin.saintpierre
• 0
7 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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