Showing : affyio • reset
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3
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*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 8 months ago by 64k • written 8 months ago by • 0
0
votes
1
reply
1.6k
views
gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 4.9 years ago by 0 • written 17.0 years ago by ★ 2.2k
0
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2
replies
788
views
trouble with installing "affyio"
affyio rstudio docker R 3.5.0
5.1 years ago shidaxia • 0
0
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1
reply
1.0k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda affyio error
5.1 years ago benjamin.saintpierre • 0
0
votes
1
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1.4k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 8.6 years ago by • 0 • written 16.9 years ago by ▴ 170
0
votes
9
replies
2.9k
views
R 2.15.1 ReadAffy error
affyio affyio
updated 11.4 years ago by ★ 1.2k • written 11.4 years ago by ★ 2.4k
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0
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1.1k
views
problem in ReadAffy function (affy and affyio libraries)
affyio affyio
13.6 years ago Groot, Philip de ▴ 630
0
votes
1
reply
953
views
justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 14.7 years ago by ▴ 20 • written 14.8 years ago by 25k
0
votes
0
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1000
views
justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
14.8 years ago Jacek Nowak ▴ 20
0
votes
9
replies
1.9k
views
affy package RMA results difference from R2.5 to R2.8
affy affyio affy affyio
updated 15.0 years ago by ▴ 140 • written 15.0 years ago by ▴ 360
0
votes
2
replies
1.3k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 15.3 years ago by ★ 1.2k • written 15.3 years ago by ▴ 40
0
votes
1
reply
1.1k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.3 years ago by ★ 5.5k • written 15.3 years ago by ▴ 200
0
votes
4
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1.3k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.3 years ago by ★ 5.5k • written 15.3 years ago by ▴ 200
0
votes
4
replies
3.0k
views
Problems installing bioconductor on ubuntu
affyio affyio
updated 15.4 years ago by 13k • written 15.4 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
15.5 years ago Luc Vallieres ▴ 20
0
votes
2
replies
1.1k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.5 years ago by 64k • written 15.5 years ago by ▴ 30
0
votes
1
reply
777
views
affyio version update problem
affy affyio affy affyio
updated 15.5 years ago by 64k • written 15.5 years ago by ▴ 10
0
votes
2
replies
1.6k
views
cannot allocate vector of size 762 Mo ! One more time !
affy affyio trigger affy affyio trigger
updated 15.6 years ago by ★ 3.9k • written 15.6 years ago by ▴ 10
0
votes
3
replies
1.5k
views
Tiling arrays and their probes
cdf affyio cdf affyio
updated 15.6 years ago by 13k • written 15.6 years ago by 13k
0
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0
replies
792
views
affyio install deps
affyio affyio
15.7 years ago Caroline Johnston ▴ 20
0
votes
1
reply
933
views
normalize.quantil, different results, affy_1.14.1 and affy_1.16.0
affy affyio affy affyio
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ▴ 380
0
votes
4
replies
1.5k
views
Help with Affy TilingArray makePDpackage
affyio oligo affyio oligo
updated 15.9 years ago by ★ 1.2k • written 15.8 years ago by ▴ 40
0
votes
0
replies
1.0k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
15.9 years ago Holger Schwender ▴ 900
0
votes
1
reply
1.1k
views
Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 15.9 years ago by 13k • written 15.9 years ago by 25k
0
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0
replies
927
views
Low-level analysis of custom microarrays
Microarray probe affy affyio Microarray probe affy affyio
15.9 years ago Teresa Colombo ▴ 10
0
votes
0
replies
1.1k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
16.0 years ago Julian Lee ▴ 140
0
votes
0
replies
817
views
Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
16.0 years ago Naira Naouar ▴ 140
0
votes
0
replies
986
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.1 years ago Boel Brynedal ▴ 200
0
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1
reply
1.2k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.1 years ago by ▴ 460 • written 16.1 years ago by ▴ 10
0
votes
1
reply
805
views
predict vsn with reference
Microarray affy vsn limma affyio Microarray affy vsn limma affyio
updated 16.2 years ago by 13k • written 16.2 years ago by ▴ 10
0
votes
2
replies
1.0k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.2 years ago by 13k • written 16.2 years ago by ▴ 70
0
votes
1
reply
1.0k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 16.2 years ago by ▴ 460 • written 16.2 years ago by ▴ 70
0
votes
0
replies
1.0k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
16.2 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
761
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
16.2 years ago Martin Morgan 25k
0
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0
replies
876
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.2 years ago Wolfgang Raffelsberger ▴ 160
0
votes
3
replies
2.0k
views
ReadAffy Error
Annotation ExperimentData cdf affy affyio Annotation ExperimentData cdf affy affyio
updated 16.3 years ago by ▴ 60 • written 16.3 years ago by ▴ 380
0
votes
1
reply
1.0k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.3 years ago by ▴ 120 • written 16.3 years ago by ▴ 10
0
votes
1
reply
904
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 16.3 years ago by 64k • written 16.3 years ago by ▴ 510
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votes
3
replies
1.3k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 16.3 years ago by ★ 7.4k • written 16.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
globaltest - multinomial model
Survival affy vsn limma globaltest affyio Survival affy vsn limma globaltest affyio
updated 16.3 years ago by ▴ 150 • written 16.3 years ago by ▴ 330
0
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0
replies
853
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
16.3 years ago Johnstone, Alice ▴ 410
0
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7
replies
1.4k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 16.3 years ago by 64k • written 16.3 years ago by ▴ 380
0
votes
3
replies
1.2k
views
GDS2eSet problems
Biobase affy convert affyio GEOquery Biobase affy convert affyio GEOquery
16.3 years ago Mcmahon, Wyatt ▴ 50
0
votes
1
reply
3.0k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 30
0
votes
1
reply
1.1k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.3 years ago by ▴ 320 • written 16.3 years ago by ▴ 270
0
votes
1
reply
1.3k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.3 years ago by ▴ 320 • written 16.3 years ago by ▴ 410
0
votes
1
reply
1.5k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.3 years ago by 25k • written 16.3 years ago by ▴ 30
0
votes
1
reply
1.0k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 16.4 years ago by ▴ 450 • written 16.4 years ago by ▴ 450
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votes
1
reply
1.2k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 16.4 years ago by 25k • written 16.4 years ago by ▴ 380
0
votes
1
reply
856
views
Needed help on maanova fitmaanova function
affy vsn limma maanova affyio affy vsn limma maanova affyio
16.4 years ago Marcelo Laia ▴ 450
50 results • Page 1 of 1
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Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0
Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…
Answer: Correct the batch effect in methylation analysis in R by Gordon Smyth 49k
You should not apply batch correction functions like harman before a limma analysis. Instead, just add `batch` to the limma linear model. …
Answer: Agilent Microarray Gene Oncology analysis gone wrong by Gordon Smyth 49k
Your use of `coef=1` is incorrect, for reasons explained in the limma User's Guide. If you had simply left `coef` at the default, then thin…
Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0
Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …
Comment: enrichGOgradient color change by James W. MacDonald 64k
You could look at my answer and extrapolate from there.
Votes
Answer: Correct the batch effect in methylation analysis in R
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
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