Showing : affyio • reset
0
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*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
1
reply
1.7k
views
gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 5.3 years ago by 0 • written 17.4 years ago by ★ 2.2k
0
votes
2
replies
918
views
trouble with installing "affyio"
affyio rstudio docker R 3.5.0
5.4 years ago shidaxia • 0
0
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1
reply
1.1k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda affyio error
5.5 years ago benjamin.saintpierre • 0
0
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1
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1.5k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 8.9 years ago by • 0 • written 17.3 years ago by ▴ 170
0
votes
9
replies
3.1k
views
R 2.15.1 ReadAffy error
affyio affyio
updated 11.8 years ago by ★ 1.2k • written 11.8 years ago by ★ 2.4k
0
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0
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1.2k
views
problem in ReadAffy function (affy and affyio libraries)
affyio affyio
14.0 years ago Groot, Philip de ▴ 630
0
votes
1
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1.0k
views
justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 15.1 years ago by ▴ 20 • written 15.2 years ago by 25k
0
votes
0
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1.1k
views
justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
15.2 years ago Jacek Nowak ▴ 20
0
votes
9
replies
2.1k
views
affy package RMA results difference from R2.5 to R2.8
affy affyio affy affyio
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by ▴ 360
0
votes
2
replies
1.4k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 15.7 years ago by ★ 1.2k • written 15.7 years ago by ▴ 40
0
votes
1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
votes
4
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1.3k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
votes
4
replies
3.1k
views
Problems installing bioconductor on ubuntu
affyio affyio
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
15.8 years ago Luc Vallieres ▴ 20
0
votes
2
replies
1.2k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 30
0
votes
1
reply
831
views
affyio version update problem
affy affyio affy affyio
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 10
0
votes
2
replies
1.7k
views
cannot allocate vector of size 762 Mo ! One more time !
affy affyio trigger affy affyio trigger
updated 15.9 years ago by ★ 3.9k • written 15.9 years ago by ▴ 10
0
votes
3
replies
1.6k
views
Tiling arrays and their probes
cdf affyio cdf affyio
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ★ 13k
0
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0
replies
865
views
affyio install deps
affyio affyio
16.1 years ago Caroline Johnston ▴ 20
0
votes
1
reply
1.0k
views
normalize.quantil, different results, affy_1.14.1 and affy_1.16.0
affy affyio affy affyio
updated 16.2 years ago by ★ 1.2k • written 16.2 years ago by ▴ 380
0
votes
4
replies
1.6k
views
Help with Affy TilingArray makePDpackage
affyio oligo affyio oligo
updated 16.2 years ago by ★ 1.2k • written 16.2 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
16.3 years ago Holger Schwender ▴ 900
0
votes
1
reply
1.1k
views
Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 16.3 years ago by ★ 13k • written 16.3 years ago by 25k
0
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0
replies
986
views
Low-level analysis of custom microarrays
Microarray probe affy affyio Microarray probe affy affyio
16.3 years ago Teresa Colombo ▴ 10
0
votes
0
replies
1.1k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
16.3 years ago Julian Lee ▴ 140
0
votes
0
replies
881
views
Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
16.4 years ago Naira Naouar ▴ 140
0
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0
replies
1.1k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.5 years ago Boel Brynedal ▴ 200
0
votes
1
reply
1.3k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.5 years ago by ▴ 460 • written 16.5 years ago by ▴ 10
0
votes
1
reply
872
views
predict vsn with reference
Microarray affy vsn limma affyio Microarray affy vsn limma affyio
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 10
0
votes
2
replies
1.1k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 70
0
votes
1
reply
1.1k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 16.6 years ago by ▴ 460 • written 16.6 years ago by ▴ 70
0
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0
replies
1.1k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
16.6 years ago Richard Friedman ★ 2.0k
0
votes
0
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813
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
16.6 years ago Martin Morgan 25k
0
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0
replies
944
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.6 years ago Wolfgang Raffelsberger ▴ 160
0
votes
3
replies
2.1k
views
ReadAffy Error
Annotation ExperimentData cdf affy affyio Annotation ExperimentData cdf affy affyio
updated 16.7 years ago by ▴ 60 • written 16.7 years ago by ▴ 380
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1
reply
1.1k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 10
0
votes
1
reply
972
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 510
0
votes
3
replies
1.4k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 10
0
votes
1
reply
1.2k
views
globaltest - multinomial model
Survival affy vsn limma globaltest affyio Survival affy vsn limma globaltest affyio
updated 16.7 years ago by ▴ 150 • written 16.7 years ago by ▴ 330
0
votes
0
replies
937
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
16.7 years ago Johnstone, Alice ▴ 410
0
votes
7
replies
1.6k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 380
0
votes
3
replies
1.3k
views
GDS2eSet problems
Biobase affy convert affyio GEOquery Biobase affy convert affyio GEOquery
16.7 years ago Mcmahon, Wyatt ▴ 50
0
votes
1
reply
3.2k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
1.2k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 270
0
votes
1
reply
1.4k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 410
0
votes
1
reply
1.6k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
1.1k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 16.7 years ago by ▴ 450 • written 16.7 years ago by ▴ 450
0
votes
1
reply
1.3k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 380
0
votes
1
reply
932
views
Needed help on maanova fitmaanova function
affy vsn limma maanova affyio affy vsn limma maanova affyio
16.7 years ago Marcelo Laia ▴ 450
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Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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