Showing : affyio • reset
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Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
4 weeks ago Seymoo • 0
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3
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3.2k
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*** caught segfault *** , cause 'memory not mapped'
affycoretools FRMA affyio AffymetrixDataTestFiles affy
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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1
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2.0k
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gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 6.3 years ago by 0 • written 18.4 years ago by ★ 2.2k
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2
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1.3k
views
trouble with installing "affyio"
affyio rstudio docker R 3.5.0
6.5 years ago shidaxia • 0
0
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1
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1.5k
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Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda affyio error
6.6 years ago benjamin.saintpierre • 0
0
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1
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1.8k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 10.0 years ago by • 0 • written 18.3 years ago by ▴ 170
0
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9
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3.6k
views
R 2.15.1 ReadAffy error
affyio affyio
updated 12.9 years ago by ★ 1.2k • written 12.9 years ago by ★ 2.4k
0
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0
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1.4k
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problem in ReadAffy function (affy and affyio libraries)
affyio affyio
15.0 years ago Groot, Philip de ▴ 630
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1
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1.2k
views
justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 16.1 years ago by ▴ 20 • written 16.2 years ago by 25k
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0
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1.3k
views
justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
16.2 years ago Jacek Nowak ▴ 20
0
votes
9
replies
2.6k
views
affy package RMA results difference from R2.5 to R2.8
affy affyio affy affyio
updated 16.4 years ago by ▴ 140 • written 16.4 years ago by ▴ 360
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2
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1.7k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 16.8 years ago by ★ 1.2k • written 16.7 years ago by ▴ 40
0
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1
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1.4k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.8 years ago by ★ 5.5k • written 16.8 years ago by ▴ 200
0
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4
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1.6k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 16.8 years ago by ★ 5.5k • written 16.8 years ago by ▴ 200
0
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4
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3.4k
views
Problems installing bioconductor on ubuntu
affyio affyio
updated 16.8 years ago by ★ 13k • written 16.8 years ago by ▴ 20
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0
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1.3k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
16.9 years ago Luc Vallieres ▴ 20
0
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2
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1.4k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 30
0
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1
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968
views
affyio version update problem
affy affyio affy affyio
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 10
0
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2
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2.0k
views
cannot allocate vector of size 762 Mo ! One more time !
affy affyio trigger affy affyio trigger
updated 17.0 years ago by ★ 3.9k • written 17.0 years ago by ▴ 10
0
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3
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1.8k
views
Tiling arrays and their probes
cdf affyio cdf affyio
updated 17.0 years ago by ★ 13k • written 17.1 years ago by ★ 13k
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0
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1.0k
views
affyio install deps
affyio affyio
17.1 years ago Caroline Johnston ▴ 20
0
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1
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1.2k
views
normalize.quantil, different results, affy_1.14.1 and affy_1.16.0
affy affyio affy affyio
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 380
0
votes
4
replies
1.9k
views
Help with Affy TilingArray makePDpackage
affyio oligo affyio oligo
updated 17.3 years ago by ★ 1.2k • written 17.3 years ago by ▴ 40
0
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0
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1.4k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
17.4 years ago Holger Schwender ▴ 900
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1
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1.3k
views
Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 17.4 years ago by ★ 13k • written 17.4 years ago by 25k
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0
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1.1k
views
Low-level analysis of custom microarrays
Microarray probe affy affyio Microarray probe affy affyio
17.4 years ago Teresa Colombo ▴ 10
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0
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1.3k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
17.4 years ago Julian Lee ▴ 140
0
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0
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1.1k
views
Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
17.5 years ago Naira Naouar ▴ 140
0
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0
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1.3k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
17.5 years ago Boel Brynedal ▴ 200
0
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1
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1.6k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.6 years ago by ▴ 460 • written 17.6 years ago by ▴ 10
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1
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1.1k
views
predict vsn with reference
Microarray affy vsn limma affyio Microarray affy vsn limma affyio
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 10
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2
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1.4k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 17.6 years ago by ★ 13k • written 17.6 years ago by ▴ 70
0
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1
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1.4k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 17.6 years ago by ▴ 460 • written 17.6 years ago by ▴ 70
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0
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1.3k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
17.6 years ago Richard Friedman ★ 2.0k
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0
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979
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
17.6 years ago Martin Morgan 25k
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0
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1.2k
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
17.7 years ago Wolfgang Raffelsberger ▴ 160
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3
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2.5k
views
ReadAffy Error
Annotation ExperimentData cdf affy affyio Annotation ExperimentData cdf affy affyio
updated 17.7 years ago by ▴ 60 • written 17.7 years ago by ▴ 380
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1
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1.3k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 17.7 years ago by ▴ 120 • written 17.7 years ago by ▴ 10
0
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1
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1.2k
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 510
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3
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1.7k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 17.7 years ago by ★ 7.4k • written 17.8 years ago by ▴ 10
0
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1
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1.4k
views
globaltest - multinomial model
Survival affy vsn limma globaltest affyio Survival affy vsn limma globaltest affyio
updated 17.7 years ago by ▴ 150 • written 17.7 years ago by ▴ 330
0
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0
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1.2k
views
Pulling significant gene ids from beadarray data
Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate
17.8 years ago Johnstone, Alice ▴ 410
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7
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1.9k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 380
0
votes
3
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1.6k
views
GDS2eSet problems
Biobase affy convert affyio GEOquery Biobase affy convert affyio GEOquery
17.8 years ago Mcmahon, Wyatt ▴ 50
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1
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3.8k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 17.8 years ago by 25k • written 17.8 years ago by ▴ 30
0
votes
1
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1.4k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.8 years ago by ▴ 320 • written 17.8 years ago by ▴ 270
0
votes
1
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1.6k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 17.8 years ago by ▴ 320 • written 17.8 years ago by ▴ 410
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1
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2.0k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 17.8 years ago by 25k • written 17.8 years ago by ▴ 30
0
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1
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1.4k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 17.8 years ago by ▴ 450 • written 17.8 years ago by ▴ 450
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1
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1.5k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 17.8 years ago by 25k • written 17.8 years ago by ▴ 380
50 results • Page 1 of 1
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Comment: EuroBioC2023 abstract submission is open! by arden • 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Comment: Gene Ontology (GO) Analysis by GA ▴ 10
Thank you!
Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction ( by sk • 0
If I use factor to create the Condition_SCR_vs_WT coef, then the other chefs would be Condition_KD1_vs_WT and Condition_KD2_vs_WT, but I ne…
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the paper I'm working off suggests removing all cells where the UMI is less than 2000. I assume we don't have enough data for umi counts. c…
Comment: How to load scRNA-seq data from GEO by Gordon Smyth 52k
I suggest you use readMM() as advised by James, but then do a massive amount of cell filtering before doing any other conversions or creati…
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Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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