Bioconductor Continuous

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6.4k

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limma covariate continuous categorical adjustment

updated 8.8 years ago by Gordon Smyth 50k • written 8.8 years ago by sg45653 • 0

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2.7k

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limma voom continuous interactions confounding

7.6 years ago lanhuong ▴ 20

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5.5k

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limma design matrix design and contrast matrix continuous interactions

updated 8.6 years ago by Aaron Lun ★ 28k • written 8.6 years ago by jaison75 ▴ 20

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1.6k

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edger design matrix continuous

updated 2.2 years ago by Tongjun • 0 • written 6.0 years ago by ashley.lu • 0

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1.6k

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deseq2 p-value continuous deseq

5.2 years ago ariel ▴ 20

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1.4k

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metagenomeseq continuous limma

7.8 years ago pjgalli2 • 0

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1.9k

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deseq2 ruvseq covariates continuous vsd

updated 8.1 years ago by Michael Love 41k • written 8.1 years ago by Mattia ▴ 10

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790

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edger continuous regression

updated 5.3 years ago by James W. MacDonald 65k • written 5.3 years ago by emb13 • 0

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1.4k

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WGCNA batch effect continuous

updated 5.2 years ago by Peter Langfelder ★ 3.0k • written 5.2 years ago by cats_dogs ▴ 20

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749

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Contrast design DESeq2 continuous

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by tiansy • 0

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555

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DESeq2 LRT continuous coeficients

updated 15 months ago by Michael Love 41k • written 15 months ago by Laia ▴ 10

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1.1k

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DESeq2 continuous

7.8 years ago pjgalli2 • 0

12 results • Page 1 of 1

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Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Answer: Help with running egsea() by James W. MacDonald 65k

There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …

Votes

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

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Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k