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Showing :
continuous
•
reset
3
votes
12
replies
1.6k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.2 years ago
ariel
▴ 20
3
votes
7
replies
1.6k
views
single continuous factor
edger
design matrix
continuous
updated 2.2 years ago by
Tongjun
• 0 • written 6.0 years ago by
ashley.lu
• 0
8
votes
3
replies
2.7k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.6 years ago
lanhuong
▴ 20
6
votes
3
replies
5.4k
views
Calculating contrasts for continuous variable anad interaction effect in Limma
limma design matrix
design and contrast matrix
continuous
interactions
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
jaison75
▴ 20
1
vote
2
replies
1.4k
views
WGCNA - confounding effect based on technical variables (some continuous)
WGCNA
batch effect
continuous
updated 5.2 years ago by
Peter Langfelder
★ 3.0k • written 5.2 years ago by
cats_dogs
▴ 20
13
votes
2
replies
6.4k
views
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
limma
covariate
continuous
categorical
adjustment
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
sg45653
• 0
1
vote
2
replies
1.9k
views
RUVSEq and VSD integration
deseq2
ruvseq
covariates
continuous
vsd
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
Mattia
▴ 10
1
vote
2
replies
1.4k
views
metagenomeSeq for continuous phenotype
metagenomeseq
continuous
limma
7.8 years ago
pjgalli2
• 0
1
vote
2
replies
783
views
EdgeR -- differentially expressed genes across a continuous variable
edger
continuous
regression
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
emb13
• 0
0
votes
1
reply
1.1k
views
Analyzing a continuous phenotype using DESeq2
DESeq2
continuous
7.8 years ago
pjgalli2
• 0
0
votes
1
reply
549
views
DESeq2 with 2 continuous factors, LRT, coeficients and slope
DESeq2
LRT
continuous
coeficients
updated 15 months ago by
Michael Love
41k • written 15 months ago by
Laia
▴ 10
0
votes
1
reply
743
views
Isolate contrasts in DESeq2 while using a combination of categorical and continuous variables
Contrast
design
DESeq2
continuous
updated 2.4 years ago by
Michael Love
41k • written 2.4 years ago by
tiansy
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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