Bioconductor Cytof

Showing : cytof • reset

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891

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cytofWorkflow cytof diffcyt

4.0 years ago achaillon • 0

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1.7k

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Cytofast FlowSom CyTOF fcs files

4.2 years ago domenico.somma • 0

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1.3k

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deseq2 mass cytometry CyTOF

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by mikhael.manurung ▴ 280

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778

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batch effect cytof

4.8 years ago mikhael.manurung ▴ 280

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2.0k

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Cydar CyTOF normalization

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by ghogg • 0

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1.1k

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cydar CyTOF

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mikhael.manurung ▴ 280

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1.5k

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cytofkit cytof write.csv output

updated 8.2 years ago by chen_hao ▴ 30 • written 8.2 years ago by cjackson13 • 0

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3.0k

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flowCore flowcore CyToF Rtsne

updated 9.4 years ago by Jiang, Mike ★ 1.3k • written 9.4 years ago by clevy ▴ 10

8 results • Page 1 of 1

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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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