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cytof
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flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
4.2 years ago
achaillon
• 0
0
votes
0
replies
1.7k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
4.4 years ago
domenico.somma
• 0
1
vote
5
replies
1.4k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 4.4 years ago by
Michael Love
43k • written 4.4 years ago by
mikhael.manurung
▴ 280
0
votes
0
replies
800
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.9 years ago
mikhael.manurung
▴ 280
1
vote
6
replies
2.1k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
ghogg
• 0
2
votes
4
replies
1.2k
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 6.0 years ago by
Aaron Lun
★ 28k • written 6.0 years ago by
mikhael.manurung
▴ 280
2
votes
2
replies
1.6k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 8.3 years ago by
chen_hao
▴ 30 • written 8.3 years ago by
cjackson13
• 0
1
vote
2
replies
3.0k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 9.5 years ago by
Jiang, Mike
★ 1.3k • written 9.5 years ago by
clevy
▴ 10
8 results • Page
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Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data
by
James W. MacDonald
68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
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Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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