Bioconductor Cytof

Showing : cytof • reset

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864

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cytofWorkflow cytof diffcyt

3.9 years ago achaillon • 0

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1.6k

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Cytofast FlowSom CyTOF fcs files

4.1 years ago domenico.somma • 0

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1.3k

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deseq2 mass cytometry CyTOF

updated 4.1 years ago by Michael Love 42k • written 4.1 years ago by mikhael.manurung ▴ 280

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757

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batch effect cytof

4.7 years ago mikhael.manurung ▴ 280

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1.9k

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Cydar CyTOF normalization

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by ghogg • 0

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1.1k

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cydar CyTOF

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by mikhael.manurung ▴ 280

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1.5k

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cytofkit cytof write.csv output

updated 8.1 years ago by chen_hao ▴ 30 • written 8.1 years ago by cjackson13 • 0

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3.0k

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flowCore flowcore CyToF Rtsne

updated 9.3 years ago by Jiang, Mike ★ 1.3k • written 9.3 years ago by clevy ▴ 10

8 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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