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cytof
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Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
ghogg
• 0
1
vote
5
replies
1.1k
views
CyTOF Differential Abundance Analysis using DESeq2
deseq2
mass cytometry
CyTOF
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
mikhael.manurung
▴ 270
2
votes
4
replies
917
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
mikhael.manurung
▴ 270
1
vote
2
replies
2.8k
views
Errors when reading CyToF flowSet into flowCore
flowCore
flowcore
CyToF
Rtsne
updated 8.7 years ago by
Jiang, Mike
★ 1.3k • written 8.7 years ago by
clevy
▴ 10
2
votes
2
replies
1.3k
views
Cytofkit - Trouble with writing files after performing the analysis
cytofkit
cytof
write.csv
output
updated 7.5 years ago by
chen_hao
▴ 30 • written 7.5 years ago by
cjackson13
• 0
0
votes
0
replies
633
views
Concatenating different runs from the same pool of barcoded CyTOF samples
batch effect
cytof
4.1 years ago
mikhael.manurung
▴ 270
0
votes
0
replies
1.4k
views
Error from FlowSom to Cytofast
Cytofast
FlowSom
CyTOF
fcs files
3.6 years ago
domenico.somma
• 0
0
votes
0
replies
716
views
flow cytometry differential expression through time
cytofWorkflow
cytof
diffcyt
3.4 years ago
achaillon
• 0
8 results • Page
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Recent ...
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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