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EdgeR data.frame glmLRT

updated 9.1 years ago by Gordon Smyth 51k • written 9.1 years ago by amoltej ▴ 10

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flowcore transform data.frame

updated 8.5 years ago by Jiang, Mike ★ 1.3k • written 8.5 years ago by Julia ▴ 20

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granges data.frame sort

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by igor ▴ 50

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907

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subjunc data.frame myExons Rsubread

updated 15 months ago by ATpoint ★ 4.5k • written 15 months ago by Sukeerthi • 0

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965

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data.frame

updated 9.1 years ago by Ryan C. Thompson ★ 7.9k • written 9.1 years ago by qiuworld.ou • 0

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1.8k

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annotationhub roadmap project rpkm data.frame

8.0 years ago wcstcyx ▴ 30

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data.frame read.table

updated 6.5 years ago by davide risso ▴ 980 • written 6.5 years ago by viviana.marin-esteban • 0

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834

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software error limma data.frame

updated 6.1 years ago by Gordon Smyth 51k • written 6.1 years ago by azmir004 • 0

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data.frame tcga reshape data

updated 5.4 years ago by Steve Lianoglou ★ 13k • written 5.4 years ago by mario.zanfardino ▴ 160

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733

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Rscript data.frame forloop R

4.2 years ago Ankit ▴ 20

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1.3k

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sushi plotBed data.frame

8.5 years ago waqasnayab • 0

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R noiseq data.frame

6.7 years ago aokoro • 0

12 results • Page 1 of 1

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Comment: DEseq2 time-series design by jihoon.kim.1495 • 0

Hello, The new post has been made [here][1]. Thanks! [1]: https://support.bioconductor.org/p/9160101/#9160101

Answer: Annotation for EPICv2 by James W. MacDonald 67k

The CpG you point out is in the intronic region of SHANK2, so will not be in any of the locations you have in your barplot. ![enter ima…

Comment: WGCNA by Lluís Revilla Sancho ▴ 750

This is a question of a package outside Bioconductor, it would be best to ask to the maintainer. But i think he moved to industry and the w…

Comment: dmpFinder for other objects by James W. MacDonald 67k

Yes, but you should probably use M-values instead of betas (convert using `logit2`). However, `dmpFinder` is just a way to allow people to…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

This last problem, I don't know how to help with, I think there's high variability here and not many degrees of freedom to overcome that

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Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet

Answer: Highly DE genes but small count difference within conditions

Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet

Trying to use enrichGO

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