Bioconductor Data.frame

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EdgeR data.frame glmLRT

updated 8.7 years ago by Gordon Smyth 50k • written 8.7 years ago by amoltej ▴ 10

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872

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data.frame

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by qiuworld.ou • 0

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1.4k

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granges data.frame sort

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by igor ▴ 40

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3.3k

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flowcore transform data.frame

updated 8.1 years ago by Jiang, Mike ★ 1.3k • written 8.1 years ago by Julia ▴ 20

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1.1k

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sushi plotBed data.frame

8.0 years ago waqasnayab • 0

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1.6k

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annotationhub roadmap project rpkm data.frame

7.6 years ago • updated 7.5 years ago wcstcyx ▴ 30

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981

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data.frame read.table

updated 6.1 years ago by davide risso ▴ 950 • written 6.1 years ago by viviana.marin-esteban • 0

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734

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software error limma data.frame

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by azmir004 • 0

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1.3k

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data.frame tcga reshape data

updated 5.0 years ago by Steve Lianoglou ★ 13k • written 5.0 years ago by mario.zanfardino ▴ 160

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581

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subjunc data.frame myExons Rsubread

updated 10 months ago by ATpoint ★ 4.1k • written 10 months ago by Sukeerthi • 0

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609

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Rscript data.frame forloop R

3.8 years ago Ankit ▴ 20

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992

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R noiseq data.frame

6.3 years ago aokoro • 0

12 results • Page 1 of 1

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Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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