Bioconductor Data.frame

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subjunc data.frame myExons Rsubread

updated 2.5 years ago by ATpoint ★ 5.0k • written 2.5 years ago by Sukeerthi • 0

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993

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Rscript data.frame forloop R

5.4 years ago Ankit ▴ 20

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data.frame tcga reshape data

updated 6.6 years ago by Steve Lianoglou ★ 13k • written 6.6 years ago by mario.zanfardino ▴ 160

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software error limma data.frame

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by azmir004 • 0

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data.frame read.table

updated 7.7 years ago by davide risso ▴ 980 • written 7.7 years ago by viviana.marin-esteban • 0

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R noiseq data.frame

7.9 years ago aokoro • 0

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annotationhub roadmap project rpkm data.frame

9.2 years ago • updated 9.1 years ago wcstcyx ▴ 30

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sushi plotBed data.frame

9.7 years ago waqasnayab • 0

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flowcore transform data.frame

updated 9.7 years ago by Jiang, Mike ★ 1.3k • written 9.7 years ago by Julia ▴ 20

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granges data.frame sort

updated 10.1 years ago by Michael Lawrence ★ 11k • written 10.1 years ago by igor ▴ 50

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data.frame

updated 10.3 years ago by Ryan C. Thompson ★ 7.9k • written 10.3 years ago by qiuworld.ou • 0

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EdgeR data.frame glmLRT

updated 10.3 years ago by Gordon Smyth 53k • written 10.3 years ago by amoltej ▴ 10

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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