Bioconductor Deconvolution

Showing : deconvolution • reset

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1.2k

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deconvolution r scRNAseq bioinformatics

2.2 years ago Hasan Alanya • 0

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919

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Deconvolution

2.5 years ago Barista • 0

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654

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PSEA Deconvolution

3.9 years ago kavator ▴ 30

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877

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methylCC deconvolution methylation dmrseq serum

4.0 years ago marcin.bazyliszek • 0

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740

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limma microarray deconvolution cell type

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by antgomo • 0

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1.3k

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deseq2 deconvolution normalization limma

updated 5.3 years ago by Michael Love 41k • written 5.3 years ago by bruce.moran ▴ 30

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1.1k

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deseq2 deconvolution rnaseq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by jennyl.smith12 • 0

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904

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deconvolution methods

6.3 years ago casey.rimland ▴ 150

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1.0k

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deconvolution rnaseq psea

6.3 years ago WouterDeCoster ▴ 130

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2.2k

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deconvolution rna-seq

updated 8.6 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by Pauly Lin ▴ 150

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1.6k

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deconvolution cellmix

8.9 years ago carleshf ▴ 10

11 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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