Showing : deconvolution • reset
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Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
deconvolution rna-seq
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 150
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1.6k
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CellMix - Custom matrix with Abbas signature
deconvolution cellmix
8.9 years ago carleshf ▴ 10
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4
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1.3k
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varianceStabilizingTransformation for clustering, deconvolution
deseq2 deconvolution normalization limma
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 30
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2
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1.2k
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How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
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2
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1.1k
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Error in DESeq2 Unmix() function: L-BFGS-B needs finite values of 'fn'
deseq2 deconvolution rnaseq
updated 5.9 years ago by 41k • written 5.9 years ago by • 0
1
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1
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1.0k
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Expression deconvolution using PSEA: applicable to RNA-seq?
deconvolution rnaseq psea
6.2 years ago WouterDeCoster ▴ 130
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918
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Best deconvolution method
Deconvolution
2.4 years ago Barista • 0
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901
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Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution methods
6.2 years ago casey.rimland ▴ 150
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874
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Deconvolution methods from WGBS data (methylation)
methylCC deconvolution methylation dmrseq serum
4.0 years ago marcin.bazyliszek • 0
0
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2
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737
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csSAMfit with covariates
limma microarray deconvolution cell type
updated 4.2 years ago by 50k • written 4.2 years ago by • 0
0
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1
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653
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PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
3.9 years ago kavator ▴ 30
11 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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