Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
degseq
•
reset
0
votes
3
replies
333
views
Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA
RNASeqPower
DEGseq
written 12 weeks ago by
Jonathan
• 0
0
votes
9
replies
1.6k
views
limma fo continous variables
limma
DEGseq
updated 11 months ago by
James W. MacDonald
68k • written 12 months ago by
mia
• 0
0
votes
1
reply
827
views
Why was the number of DEG different between DESeq results and count by myself using excel?
RNASeqData
DEGseq
updated 18 months ago by
ATpoint
★ 4.7k • written 18 months ago by
sybyun419
• 0
0
votes
2
replies
788
views
RNA seq differential expression analysis
DEGseq
RNASeqData
limma
updated 20 months ago by
Gordon Smyth
52k • written 20 months ago by
Shaimaa Gamal
• 0
2
votes
5
replies
1.6k
views
Create the design matrix
DEGseq
edgeR
RNASeq
2.1 years ago
Mohammad
• 0
0
votes
0
replies
1.2k
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
2.3 years ago
Rob
• 0
0
votes
2
replies
1.0k
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
CP
• 0
0
votes
2
replies
1.2k
views
Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression
GeneExpression
R
enrichment
DEGseq
updated 2.6 years ago by
swbarnes2
★ 1.4k • written 2.6 years ago by
ac.mainul.mmb
• 0
1
vote
4
replies
1.2k
views
How to figure out the FC value from Limma
limma
DEGseq
DifferentialExpression
updated 2.7 years ago by
Kevin Blighe
★ 4.0k • written 2.7 years ago by
beslinail
• 0
0
votes
1
reply
1.1k
views
R CODE TO FIND AGGREGATE FOR DUPLICATES
aggregateBioVar
DEGseq
MicroarrayData
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
biomyscience
• 0
0
votes
1
reply
859
views
Meta analysis
DEGseq
Metanalysis
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 3.3 years ago by
biomyscience
• 0
1
vote
2
replies
1.0k
views
DESeq2 desing formula for cell fraction and siRNA scramble
DEGseq
DESeq2
Designformula
updated 3.8 years ago by
swbarnes2
★ 1.4k • written 3.8 years ago by
Nicolò
• 0
1
vote
7
replies
1.7k
views
how to make a contrast of uniquely DE genes
edgeR
limma
RNA-seq
DEGseq
3.9 years ago
decppced
• 0
0
votes
3
replies
1.4k
views
DeSeq2- design experiment
rnaseq
degseq
7.3 years ago
laksharikrish
• 0
0
votes
1
reply
1.4k
views
Problem with DEGseq/samWrapper
degseq
updated 7.7 years ago by
ab.tsubaki
• 0 • written 10.2 years ago by
jovel_juan
▴ 30
0
votes
0
replies
1.1k
views
Regarding q-value
DEGseq
DEGseq
11.7 years ago
deepika lakhwani
▴ 170
0
votes
1
reply
1.6k
views
Problems in running easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
Annotation
Organism
DEGseq
easyRNASeq
updated 12.1 years ago by
delhomme@embl.de
★ 1.2k • written 12.1 years ago by
Guest User
★ 13k
0
votes
3
replies
1.7k
views
Analysis of public GEO datasets - NGS
DEGseq
DEGseq
updated 12.4 years ago by
Aliaksei Holik
▴ 350 • written 12.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
NGS public data analysis
Transcription
DEGseq
Transcription
DEGseq
12.4 years ago
Jill Pleasance
▴ 10
0
votes
1
reply
4.4k
views
RNA-seq analysis and two-way ANOVAs
edgeR
baySeq
DEGseq
DESeq
DEXSeq
edgeR
baySeq
DEGseq
DESeq
DEXSeq
updated 12.5 years ago by
Gordon Smyth
52k • written 12.5 years ago by
Elena Sorokin
▴ 160
0
votes
3
replies
1.4k
views
Help with plot comparison
baySeq
DEGseq
baySeq
DEGseq
13.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.2k
views
DEGseq help
baySeq
DEGseq
baySeq
DEGseq
13.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.3k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
13.0 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
14.6 years ago
sunghee OH
▴ 50
0
votes
1
reply
1.2k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 14.6 years ago by
Simon Anders
★ 3.8k • written 14.6 years ago by
sunghee OH
▴ 50
0
votes
8
replies
2.4k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 14.7 years ago by
Naomi Altman
★ 6.0k • written 14.7 years ago by
michael watson IAH-C
★ 3.4k
0
votes
3
replies
1.9k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
updated 15.3 years ago by
Ulrike Goebel
▴ 110 • written 15.4 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
1.2k
views
New package to identify differentially expressed genes from RNA-seq data
Annotation
DEGseq
Annotation
DEGseq
15.4 years ago
Likun Wang
▴ 50
28 results • Page
1 of 1
Recent ...
Replies
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Awards
• All
Popular Question
to
maltethodberg
▴ 180
Popular Question
to
abadgerw
• 0
Popular Question
to
Jim Nemesh
▴ 10
Popular Question
to
Wolfgang Huber
★ 13k
Teacher
to
James W. MacDonald
68k
Locations
• All
The city by the bay,
29 minutes ago
Canada,
1 hour ago
Denmark,
1 hour ago
United States,
3 hours ago
WEHI, Melbourne, Australia,
4 hours ago
Traffic: 554 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6