Bioconductor Dependencies

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scde ubuntu dependencies R

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by aditya531996 • 0

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deseq2 ubuntu edger dependencies

7.2 years ago aditya531996 • 0

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parathyroidse package installation dependencies

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by mmalek • 0

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dependencies error

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by ericaugustoito • 0

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cran package development dependencies

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by bjgrant • 0

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R package dependencies

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by MAPK • 0

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versions BiocVersion dependencies

updated 3.1 years ago by shepherl 3.8k • written 3.1 years ago by sohitmiglani • 0

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rhdf5 hdf5 dependencies

updated 7.8 years ago by Mike Smith ★ 6.5k • written 7.8 years ago by thabermann • 0

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package installation dependencies bagfootr bagfoot

updated 6.5 years ago by Sean Davis 21k • written 6.5 years ago by rbronste ▴ 60

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annotationhub dependencies

8.4 years ago dalloliogm ▴ 50

10 results • Page 1 of 1

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Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

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A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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