Bioconductor Dependencies

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parathyroidse package installation dependencies

updated 7.9 years ago by Hervé Pagès 16k • written 7.9 years ago by mmalek • 0

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annotationhub dependencies

8.4 years ago dalloliogm ▴ 50

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deseq2 ubuntu edger dependencies

7.2 years ago aditya531996 • 0

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scde ubuntu dependencies R

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by aditya531996 • 0

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rhdf5 hdf5 dependencies

updated 7.8 years ago by Mike Smith ★ 6.5k • written 7.8 years ago by thabermann • 0

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package installation dependencies bagfootr bagfoot

updated 6.5 years ago by Sean Davis 21k • written 6.5 years ago by rbronste ▴ 60

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cran package development dependencies

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by bjgrant • 0

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939

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versions BiocVersion dependencies

updated 3.1 years ago by shepherl 3.9k • written 3.1 years ago by sohitmiglani • 0

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R package dependencies

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by MAPK • 0

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855

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dependencies error

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by ericaugustoito • 0

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Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Comment: Help with running egsea() by James W. MacDonald 65k

I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.

Answer: Help with running egsea() by James W. MacDonald 65k

There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …

Comment: [Mfuzz] Error in cmeans(exprs(eset) by Caio • 0

You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …

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Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Answer: Help with running egsea()

Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)

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