Bioconductor Dna

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ABI sequence DNA melting curve

updated 9.0 years ago by Hervé Pagès 16k • written 9.0 years ago by Prasanth ▴ 20

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2.5k

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biostrings mask repeatmasker DNA

updated 3.3 years ago by ivantsers • 0 • written 6.5 years ago by beausoleilmo • 0

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1.8k

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decipher DNA biostrings

updated 6.4 years ago by Erik Wright ▴ 150 • written 6.4 years ago by reubenmcgregor88 • 0

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607

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DNA alphabet

updated 5.2 years ago by James W. MacDonald 66k • written 5.2 years ago by fjia304 • 0

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1.1k

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software codon usage bias dna

updated 4.5 years ago by anamaria ▴ 10 • written 4.5 years ago by jol.espinoz ▴ 40

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500

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DNA repeats

16 months ago • updated 15 months ago me-nobody • 0

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784

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.5 years ago by James W. MacDonald 66k • written 2.5 years ago by HELEN • 0

7 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

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how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Popular Question to mohammedtoufiq91 ▴ 10