Bioconductor Dna

Showing : dna • reset

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2.5k

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biostrings mask repeatmasker DNA

updated 3.3 years ago by ivantsers • 0 • written 6.5 years ago by beausoleilmo • 0

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1.8k

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decipher DNA biostrings

updated 6.4 years ago by Erik Wright ▴ 150 • written 6.4 years ago by reubenmcgregor88 • 0

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1.4k

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ABI sequence DNA melting curve

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by Prasanth ▴ 20

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1.1k

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software codon usage bias dna

updated 4.4 years ago by anamaria ▴ 10 • written 4.4 years ago by jol.espinoz ▴ 40

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767

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TFBSTools DNASeqData readFASTA DNA RStudio

updated 2.5 years ago by James W. MacDonald 65k • written 2.5 years ago by HELEN • 0

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600

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DNA alphabet

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by fjia304 • 0

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487

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DNA repeats

15 months ago me-nobody • 0

7 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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