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eBayes
•
reset
9
votes
4
replies
1.9k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
4.7 years ago
snijesh
▴ 200
0
votes
5
replies
1.9k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 5.7 years ago by
Gordon Smyth
53k • written 5.7 years ago by
irene.roman
• 0
0
votes
6
replies
2.6k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 6.6 years ago by
Gordon Smyth
53k • written 6.6 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
2.2k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 17 months ago by
Gordon Smyth
53k • written 7.0 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
2.2k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
7.7 years ago
darthratus
• 0
1
vote
2
replies
1.8k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 8.0 years ago by
Gordon Smyth
53k • written 8.0 years ago by
reventropy2003
▴ 10
0
votes
6
replies
2.8k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
8.0 years ago
peirinl
• 0
1
vote
3
replies
2.0k
views
Error from eBayes in limma package
eBayes
limma
error
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.9k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
8.6 years ago
bag59
• 0
4
votes
2
replies
2.4k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 2.5 years ago by
Gordon Smyth
53k • written 8.8 years ago by
cemcdono
• 0
1
vote
1
reply
1.2k
views
Limma ebayes function error without any messages
limma
ebayes
updated 10.0 years ago by
Aaron Lun
★ 29k • written 10.0 years ago by
bharata1803
▴ 60
3
votes
3
replies
2.1k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 10.2 years ago by
Gordon Smyth
53k • written 10.2 years ago by
ssrajan86
• 0
0
votes
1
reply
1.6k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
Vani
▴ 20
6
votes
5
replies
2.3k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
Paulo Nuin
▴ 200
14 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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