Bioconductor EBayes

Showing : eBayes • reset

votes

replies

1.9k

views

topTable MicroarrayData ebayes limma Microarray

4.7 years ago snijesh ▴ 200

votes

replies

1.9k

views

limma eBayes decideTests topTable

updated 5.7 years ago by Gordon Smyth 53k • written 5.7 years ago by irene.roman • 0

votes

replies

2.7k

views

limma eBayes

updated 6.7 years ago by Gordon Smyth 53k • written 6.7 years ago by Sebastian Hesse ▴ 70

votes

2.2k

views

Limma ebayes bayesian ls

updated 17 months ago by Gordon Smyth 53k • written 7.0 years ago by CantExitVIM ▴ 10

vote

replies

2.3k

views

model.matrix lmFit eBayes GEOquery limma

7.7 years ago darthratus • 0

vote

replies

1.9k

views

ebayes limma bioconductor

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by reventropy2003 ▴ 10

votes

replies

2.8k

views

ebayes limma

8.0 years ago peirinl • 0

vote

replies

2.0k

views

eBayes limma error

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by calen.p.ryan • 0

votes

replies

1.9k

views

ebayes limma voom

8.7 years ago bag59 • 0

votes

replies

2.4k

views

limma ebayes

updated 2.5 years ago by Gordon Smyth 53k • written 8.8 years ago by cemcdono • 0

vote

1.2k

views

limma ebayes

updated 10.0 years ago by Aaron Lun ★ 29k • written 10.0 years ago by bharata1803 ▴ 60

votes

replies

2.1k

views

limma ebayes statistical inference

updated 10.2 years ago by Gordon Smyth 53k • written 10.2 years ago by ssrajan86 • 0

votes

1.6k

views

limma eset error ebayes

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by Vani ▴ 20

votes

replies

2.3k

views

ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.8 years ago by Gordon Smyth 53k • written 10.8 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

Recent ...

Replies

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Votes

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

Awards • All