Showing : eBayes • reset
9
votes
4
replies
2.0k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
4.9 years ago snijesh ▴ 200
0
votes
5
replies
2.1k
views
eBayes options and decideTests method
limma eBayes decideTests topTable
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
6
replies
2.8k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma eBayes
updated 6.9 years ago by 53k • written 6.9 years ago by ▴ 70
3
votes
1
reply
2.3k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 20 months ago by 53k • written 7.3 years ago by ▴ 10
1
vote
7
replies
2.4k
views
model.matrix from GDS data
model.matrix lmFit eBayes GEOquery limma
7.9 years ago darthratus • 0
1
vote
2
replies
1.9k
views
Limma Ebayes on SILAC data
ebayes limma bioconductor
updated 8.2 years ago by 53k • written 8.2 years ago by ▴ 10
0
votes
6
replies
2.9k
views
Error in last step of Limma analysis (eBayes)
ebayes limma
8.3 years ago peirinl • 0
1
vote
3
replies
2.1k
views
Error from eBayes in limma package
eBayes limma error
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
2
votes
2
replies
2.0k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes limma voom
8.9 years ago bag59 • 0
4
votes
2
replies
2.5k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma ebayes
updated 2.8 years ago by 53k • written 9.0 years ago by • 0
1
vote
1
reply
1.3k
views
Limma ebayes function error without any messages
limma ebayes
updated 10.2 years ago by ★ 29k • written 10.2 years ago by ▴ 60
3
votes
3
replies
2.2k
views
Sub : Limma ebayes
limma ebayes statistical inference
updated 10.4 years ago by 53k • written 10.5 years ago by • 0
0
votes
1
reply
1.7k
views
LmFit and eBayes on merged ESET giving errors
limma eset error ebayes
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 20
6
votes
5
replies
2.4k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes expression affymetrix pd.hugene.2.0.st limma
updated 11.0 years ago by 53k • written 11.0 years ago by ▴ 200
14 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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