Bioconductor EBayes

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topTable MicroarrayData ebayes limma Microarray

4.6 years ago snijesh ▴ 200

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limma eBayes decideTests topTable

updated 5.5 years ago by Gordon Smyth 52k • written 5.5 years ago by irene.roman • 0

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limma eBayes

updated 6.5 years ago by Gordon Smyth 52k • written 6.5 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 16 months ago by Gordon Smyth 52k • written 6.9 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

7.5 years ago darthratus • 0

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ebayes limma bioconductor

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by reventropy2003 ▴ 10

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ebayes limma

7.9 years ago peirinl • 0

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eBayes limma error

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by calen.p.ryan • 0

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ebayes limma voom

8.5 years ago bag59 • 0

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limma ebayes

updated 2.4 years ago by Gordon Smyth 52k • written 8.6 years ago by cemcdono • 0

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limma ebayes

updated 9.8 years ago by Aaron Lun ★ 29k • written 9.8 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 10.1 years ago by Gordon Smyth 52k • written 10.1 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.6 years ago by Gordon Smyth 52k • written 10.6 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

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Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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