Bioconductor EBayes

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topTable MicroarrayData ebayes limma Microarray

4.7 years ago snijesh ▴ 200

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limma eBayes decideTests topTable

updated 5.7 years ago by Gordon Smyth 53k • written 5.7 years ago by irene.roman • 0

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limma eBayes

updated 6.6 years ago by Gordon Smyth 53k • written 6.6 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 17 months ago by Gordon Smyth 53k • written 7.0 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

7.7 years ago darthratus • 0

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ebayes limma bioconductor

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by reventropy2003 ▴ 10

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ebayes limma

8.0 years ago peirinl • 0

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eBayes limma error

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by calen.p.ryan • 0

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ebayes limma voom

8.6 years ago bag59 • 0

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limma ebayes

updated 2.5 years ago by Gordon Smyth 53k • written 8.8 years ago by cemcdono • 0

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limma ebayes

updated 10.0 years ago by Aaron Lun ★ 29k • written 10.0 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 10.2 years ago by Gordon Smyth 53k • written 10.2 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.8 years ago by Gordon Smyth 53k • written 10.8 years ago by Paulo Nuin ▴ 200

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

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Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

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