Biostar ESet

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8.0k

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microarray affy eset

updated 5.3 years ago by Gordon Smyth 45k • written 5.3 years ago by mathavanbioinfo ▴ 20

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7.3k

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eset annotation

updated 6.9 years ago by Diego Diez ▴ 760 • written 6.9 years ago by Vani ▴ 20

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5.6k

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limma differential expression design matrix error eset

updated 6.9 years ago by Aaron Lun ★ 27k • written 6.9 years ago by Vani ▴ 20

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2.8k

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methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 6.9 years ago by James W. MacDonald 60k • written 6.9 years ago by martens.christopher • 0

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2.1k

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eset annotation

updated 6.9 years ago by James W. MacDonald 60k • written 6.9 years ago by colonppg ▴ 30

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2.1k

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biobase eSet expressionSet

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by Guido Hooiveld ★ 3.2k

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1.0k

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subsetting eSet

6.2 years ago Shamim Sarhadi ▴ 20

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1.0k

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limma microarray eset

6.9 years ago Vani ▴ 20

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938

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limma eset error ebayes

updated 6.9 years ago by James W. MacDonald 60k • written 6.9 years ago by Vani ▴ 20

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799

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scan.upc eset

updated 6.8 years ago by Stephen Piccolo ▴ 580 • written 6.8 years ago by Jo ▴ 20

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770

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biobase expressionset eset

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by andrew.birnberg ▴ 20

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475

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Minfi eset

4.4 years ago SplittingInfinity ▴ 60

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406

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affy eset

updated 16 months ago by James W. MacDonald 60k • written 16 months ago by AZ ▴ 30

13 results • Page 1 of 1

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Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Mohamed • 0

Thanks a lot, will try this and see.

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a by Steve Lianoglou 13k

> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…

Comment: Italicise by Kevin Blighe 3.5k

Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…

Votes

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

Awards • All

Teacher to Michael Love 37k