Showing : easyrnaseq • reset
1
vote
2
replies
3.2k
views
mgcv not updating
mgcv easyRNASeq
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 10
0
votes
3
replies
1.7k
views
simpleRNASeq easyRNAseq warnings edgeR error
simplernaseq easyrnaseq edger DEformats
updated 7.7 years ago by ▴ 320 • written 7.8 years ago by • 0
4
votes
5
replies
2.0k
views
Warning: missing reverse strand option in easyRNASeq.
easyrnaseq rnaseq strand
updated 8.4 years ago by 16k • written 8.4 years ago by ▴ 10
0
votes
1
reply
1.8k
views
simpleRNASeq stopped running (related to S4 vectors?)
simplernaseq easyrnaseq s4vectors
updated 9.9 years ago by ▴ 320 • written 9.9 years ago by • 0
0
votes
2
replies
2.0k
views
Package installation errors for Bioconductor and easyRNASeq
installation biocinstaller easyrnaseq
updated 9.9 years ago by 25k • written 9.9 years ago by • 0
2
votes
2
replies
1.8k
views
Error reading BAM file with duplicated header in easyRNAseq and GenomicAlignments
software error easyrnaseq genomicalignments bam
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 10
0
votes
5
replies
2.9k
views
easyRNAseq annotation file
easyrnaseq annotation
10.1 years ago kylvalda • 0
0
votes
17
replies
3.9k
views
Issue with easyRNASeq
easyRNASeq error
10.3 years ago ea11g0 • 0
1
vote
13
replies
4.0k
views
Several issues with the package easyRNASeq
easyrnaseq bug
10.3 years ago Michael Dondrup ▴ 10
0
votes
2
replies
1.6k
views
simpleRNASeq error importing BAM files
simpleRNASeq easyRNASeq
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
0
votes
6
replies
2.2k
views
easyRNASeq: "Error in IRangesList"
easyRNASeq
10.4 years ago surjray • 0
0
votes
5
replies
3.2k
views
count tables created with easyRNASeq and the rpkm() function from edgeR
easyrnaseq edger rpkm
updated 10.7 years ago by ▴ 320 • written 10.7 years ago by ▴ 80
2
votes
6
replies
2.5k
views
easyRNAseq says Your annotation is not in sync with your alignments!
easyRNAseq
updated 10.7 years ago by ▴ 320 • written 10.8 years ago by • 0
0
votes
1
reply
3.7k
views
easyRNASeq error: Error in aggregate.data.frame(as.data.frame(x), ...) : no rows to aggregate
easyrnaseq
11.0 years ago sylvian • 0
1
vote
5
replies
2.6k
views
Getting a count matrix from a SummerizedExpriment with EasyRNASeq
easyrnaseq
11.0 years ago Sylvain Foisy ▴ 80
0
votes
1
reply
1.4k
views
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
easyRNASeq easyRNASeq
updated 11.6 years ago by ▴ 320 • written 11.6 years ago by ▴ 80
0
votes
2
replies
1.7k
views
Devel version of easyRNASeq: using the simpleRNASeq method gives an error
Annotation easyRNASeq Annotation easyRNASeq
updated 11.6 years ago by ▴ 80 • written 11.6 years ago by ▴ 320
0
votes
1
reply
1.7k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges Rsubread easyRNASeq GO
updated 11.9 years ago by ▴ 320 • written 11.9 years ago by 53k
0
votes
1
reply
2.2k
views
Using a countDataSet as input data in DESeq2
easyRNASeq easyRNASeq
updated 11.9 years ago by 43k • written 11.9 years ago by ★ 13k
0
votes
0
replies
1.5k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Coverage Annotation GO Cancer Organism edgeR DESeq GenomicRanges easyRNASeq Coverage GO
11.9 years ago Nicolas Delhomme ▴ 320
0
votes
2
replies
1.9k
views
easyRNAseq and DEseq for no replicate RNAseq
RNASeq PROcess easyRNASeq RNASeq PROcess easyRNASeq
updated 11.9 years ago by ▴ 320 • written 11.9 years ago by ▴ 10
0
votes
8
replies
2.6k
views
Using easyRNASeq package: question about BAM/BAI and links to them
easyRNASeq easyRNASeq
updated 11.9 years ago by ▴ 80 • written 11.9 years ago by ▴ 80
0
votes
7
replies
3.5k
views
GTF file error when using easyRNAseq�
Annotation Organism BSgenome BSgenome DESeq easyRNASeq Annotation Organism BSgenome DESeq
updated 12.0 years ago by ★ 1.2k • written 12.0 years ago by ★ 13k
0
votes
1
reply
1.7k
views
eayRNASeq with Ensemble GRCh37 help
Annotation Organism easyRNASeq DESeq2 Annotation Organism easyRNASeq DESeq2
updated 12.1 years ago by ★ 1.2k • written 12.1 years ago by ▴ 10
0
votes
5
replies
2.2k
views
EasyRNAseq - error in building count table - Error in unlist
Sequencing RNASeq edgeR easyRNASeq Sequencing RNASeq edgeR easyRNASeq
updated 12.2 years ago by ★ 1.2k • written 12.2 years ago by ★ 13k
0
votes
0
replies
1.4k
views
error in "count" for SummarizedExperiment in easyRNASeq
easyRNASeq DESeq2 easyRNASeq DESeq2
12.2 years ago Lescai, Francesco ▴ 380
0
votes
0
replies
1.3k
views
easyRNASeq packages: overlapping exons warning unsolved (?) and use of paired end information
Annotation Organism edgeR DESeq easyRNASeq Annotation Organism edgeR DESeq easyRNASeq
12.4 years ago Gabriele Zoppoli ▴ 50
0
votes
1
reply
1.4k
views
it is strange that I cannot get the fpkm by using easyRNASeq
Annotation BSgenome BSgenome easyRNASeq Annotation BSgenome BSgenome easyRNASeq
updated 12.6 years ago by ▴ 30 • written 12.6 years ago by ★ 13k
0
votes
1
reply
1.8k
views
some problems of easyRNASeq� : about the gtf files
Annotation easyRNASeq Annotation easyRNASeq
updated 12.6 years ago by ★ 1.2k • written 12.6 years ago by ★ 13k
0
votes
0
replies
1.7k
views
RPKM calculation genewise
Normalization Visualization easyRNASeq Normalization Visualization easyRNASeq
12.7 years ago delhomme@embl.de ★ 1.2k
0
votes
0
replies
1.1k
views
easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
12.7 years ago delhomme@embl.de ★ 1.2k
0
votes
0
replies
1.2k
views
easyRNA adapting annotations to avoid overlapping synthetic exons
Annotation Organism easyRNASeq Annotation Organism easyRNASeq
12.7 years ago Bayles, Darrell ▴ 10
0
votes
0
replies
1.1k
views
easyRNASeq read counts varying when recounting same sample!
Annotation GO biomaRt easyRNASeq Annotation GO biomaRt easyRNASeq
12.7 years ago delhomme@embl.de ★ 1.2k
0
votes
0
replies
1.0k
views
easyRNASeq read counts varying when recounting same sample!
biomaRt easyRNASeq biomaRt easyRNASeq
12.7 years ago René ▴ 40
0
votes
1
reply
1.7k
views
Problems in running easyRNASeq
Annotation Organism DEGseq easyRNASeq Annotation Organism DEGseq easyRNASeq
updated 12.8 years ago by ★ 1.2k • written 12.8 years ago by ★ 13k
0
votes
2
replies
2.7k
views
using easyRNASeq to calculate RPKM values
easyRNASeq easyRNASeq
updated 12.8 years ago by ★ 1.2k • written 12.8 years ago by ▴ 260
0
votes
1
reply
1.6k
views
easyRNAseq remove overlapping features
Annotation BSgenome BSgenome IRanges easyRNASeq Annotation BSgenome BSgenome IRanges
updated 12.8 years ago by ★ 1.2k • written 12.8 years ago by ▴ 160
0
votes
0
replies
1.9k
views
Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq Annotation Normalization Cancer Organism BSgenome BSgenome easyRNASeq RNASeq
12.9 years ago Richard Friedman ★ 2.0k
0
votes
7
replies
2.9k
views
Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks
RNASeq Annotation Cancer edgeR cqn easyRNASeq RNASeq Annotation Cancer edgeR cqn
updated 12.9 years ago by ★ 1.2k • written 12.9 years ago by ★ 2.0k
0
votes
2
replies
1.6k
views
error message with easyRNASeq use case
RNASeq Cancer Organism easyRNASeq RNASeq Cancer Organism easyRNASeq
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 2.0k
0
votes
1
reply
1.3k
views
easyRNASeq and edgeR
BSgenome BSgenome edgeR easyRNASeq BSgenome BSgenome edgeR easyRNASeq
updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ★ 13k
0
votes
3
replies
2.3k
views
Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 13.0 years ago by 21k • written 13.0 years ago by ★ 2.0k
0
votes
0
replies
1.6k
views
get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
13.0 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
1.6k
views
error in easyRNASeq
RNASeq BSgenome BSgenome easyRNASeq RNASeq BSgenome BSgenome easyRNASeq
updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ▴ 510
0
votes
0
replies
992
views
bam files in sub-directories
easyRNASeq easyRNASeq
13.0 years ago RenéBöttcher ▴ 20
0
votes
1
reply
1.1k
views
bam files in sub-directories
easyRNASeq easyRNASeq
updated 13.0 years ago by ★ 1.2k • written 13.0 years ago by ★ 13k
0
votes
0
replies
1.1k
views
question on easyRNASeq developer version
GLAD easyRNASeq GLAD easyRNASeq
13.1 years ago delhomme@embl.de ★ 1.2k
0
votes
0
replies
1.1k
views
get synthetic exon dataset with easyRNASeq
RNASeq Annotation Normalization GO PROcess easyRNASeq RNASeq Annotation Normalization GO
13.1 years ago delhomme@embl.de ★ 1.2k
0
votes
1
reply
1.1k
views
warnings on easyRNASeq package
Annotation Organism PROcess GenomicRanges easyRNASeq Annotation Organism PROcess
updated 13.1 years ago by ▴ 10 • written 13.1 years ago by ★ 1.2k
0
votes
2
replies
1.4k
views
RNAseq object
RNASeq DESeq easyRNASeq RNASeq DESeq easyRNASeq
updated 13.1 years ago by ★ 4.2k • written 13.1 years ago by ★ 13k
65 results • Page 1 of 2
Recent ...
Replies
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Locations • All
United States, 20 minutes ago
United States, 21 minutes ago
United States, 43 minutes ago
United States, 46 minutes ago
Norway, 1 hour ago
Traffic: 624 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6