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ebayes
•
reset
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.3 years ago
darthratus
• 0
0
votes
6
replies
2.1k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
6.6 years ago
peirinl
• 0
0
votes
6
replies
1.8k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
Sebastian Hesse
▴ 70
6
votes
5
replies
1.8k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.4 years ago by
Gordon Smyth
50k • written 9.4 years ago by
Paulo Nuin
▴ 200
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
irene.roman
• 0
6
votes
4
replies
1.3k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
3.3 years ago
snijesh
▴ 20
3
votes
3
replies
1.7k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
ssrajan86
• 0
1
vote
3
replies
1.6k
views
Error from eBayes in limma package
eBayes
limma
error
updated 6.8 years ago by
James W. MacDonald
66k • written 6.8 years ago by
calen.p.ryan
• 0
4
votes
2
replies
1.9k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 13 months ago by
Gordon Smyth
50k • written 7.3 years ago by
cemcdono
• 0
2
votes
2
replies
1.5k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.2 years ago
bag59
• 0
1
vote
2
replies
1.5k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
reventropy2003
▴ 10
0
votes
1
reply
1.3k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 8.9 years ago by
James W. MacDonald
66k • written 8.9 years ago by
Vani
▴ 20
1
vote
1
reply
926
views
Limma ebayes function error without any messages
limma
ebayes
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
bharata1803
▴ 60
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 13 days ago by
Gordon Smyth
50k • written 5.6 years ago by
CantExitVIM
▴ 10
14 results • Page
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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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