Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ensemblVEP
•
reset
0
votes
0
replies
539
views
RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
23 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
768
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 2.6 years ago by
Michael Love
43k • written 2.6 years ago by
DHARMESH
• 0
2
votes
3
replies
2.8k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
3.0 years ago
jtaylor-predicine
• 0
0
votes
1
reply
1.3k
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 3.9 years ago by
Kevin Blighe
★ 4.0k • written 3.9 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.9k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
4.8 years ago • updated 4.6 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.8k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
6.4 years ago
ycchang
• 0
2
votes
3
replies
2.2k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 6.7 years ago by
Valerie Obenchain
★ 6.8k • written 6.7 years ago by
mumichae
▴ 20
2
votes
5
replies
3.1k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
patrick.turko
▴ 10
0
votes
4
replies
2.0k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 7.7 years ago by
shepherl
4.2k • written 7.7 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.4k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
8.6 years ago
mlrubio
• 0
0
votes
0
replies
2.1k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
8.6 years ago
mikko.arvas
• 0
0
votes
1
reply
1.2k
views
ensemblVEP problem with MySQL database
ensemblvep
9.3 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.9k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.5k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 11.0 years ago by
Valerie Obenchain
★ 6.8k • written 11.0 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
2.7k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 11.9 years ago by
Valerie Obenchain
★ 6.8k • written 11.9 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.4k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
11.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.6k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
12.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.7k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 12.2 years ago by
Valerie Obenchain
★ 6.8k • written 12.2 years ago by
Guest User
★ 13k
0
votes
5
replies
2.6k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 12.7 years ago by
Valerie Obenchain
★ 6.8k • written 12.7 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
Replies
Comment: How can I correctly use phyloseq with Docker?
by
Suzy
• 0
The graphics in [Snow Rider][1] are colorful and charming, adding to the festive atmosphere. [1]: https://snowriderio.io
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards
• All
Commentator
to
sina.nassiri
▴ 130
Popular Question
to
Hervé Pagès
16k
Popular Question
to
jared.andrews07
▴ 30
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.2k
Locations
• All
United States,
3 minutes ago
The city by the bay,
3 minutes ago
Germany,
9 minutes ago
Germany,
20 minutes ago
Pittsburgh, United States,
1 hour ago
Traffic: 823 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6