Showing : ensemblVEP • reset
0
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4
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1.2k
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ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.2 years ago by 3.9k • written 6.2 years ago by ▴ 740
2
votes
5
replies
2.2k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error ensemblVEP
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 10
2
votes
3
replies
1.4k
views
Error in VCF parsing with VariantAnnotation
software error VariantAnnotation ensemblVEP
updated 5.1 years ago by ★ 6.8k • written 5.2 years ago by ▴ 20
2
votes
4
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1.4k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 350
0
votes
5
replies
1.3k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP ensemblVEP
updated 10.6 years ago by ★ 6.8k • written 10.6 years ago by ★ 13k
2
votes
3
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1.6k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity ensemblVEP docker
17 months ago jtaylor-predicine • 0
0
votes
1
reply
419
views
Differential express genes in one group across all time points
DESeq2 edgeR BP4RNAseq ensemblVEP
updated 13 months ago by 42k • written 13 months ago by • 0
0
votes
2
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2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.3 years ago by ★ 6.8k • written 10.3 years ago by ▴ 30
0
votes
5
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2.0k
views
ensemblVEP: passing on coverage / frequency information
Coverage VariantTools ensemblVEP Coverage VariantTools ensemblVEP
updated 11.1 years ago by ★ 6.8k • written 11.1 years ago by ★ 13k
2
votes
3
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2.1k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 9.4 years ago by ★ 6.8k • written 9.4 years ago by ▴ 50
0
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0
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168
views
RFC: significant changes to ensemblVEP package
VariantAnnotation ensemblVEP
3 months ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.3k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation
10.5 years ago Valerie Obenchain ★ 6.8k
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1.1k
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ensemblVEP, variant_effect_predictor versions and release schedule
Cancer MLInterfaces bridge ensemblVEP AnnotationHub Cancer MLInterfaces bridge ensemblVEP
10.4 years ago Valerie Obenchain ★ 6.8k
0
votes
1
reply
885
views
ensemblVEP problem with MySQL database
ensemblvep
7.7 years ago clairelsimpson ▴ 10
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0
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1.7k
views
problem using ensemblVEP with GRC37
ensemblvep grch37
7.0 years ago mikko.arvas • 0
0
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0
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1.1k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
7.0 years ago mlrubio • 0
0
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2
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1.1k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R ensemblVEP gene annotation Variant Effect Predictor Ensembl VEP
4.8 years ago ycchang • 0
0
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2
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1.3k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
3.2 years ago • updated 3.0 years ago mchakiachvili ▴ 20
0
votes
1
reply
791
views
Ensembl REST API Endpoints
ensemblVEP EnsDb.Hsapiens.v79
updated 2.3 years ago by ★ 3.9k • written 2.3 years ago by • 0
19 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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