Bioconductor Entrez gene identifiers

Showing : entrez gene identifiers • reset

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2.4k

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biomart entrez gene identifiers ensembl conversion

updated 6.0 years ago by Mike Smith ★ 6.6k • written 6.0 years ago by EdgeR_A_Poe ▴ 10

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2.7k

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biomart ensembl entrez gene identifiers

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by rina ▴ 30

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13k

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org.hs.eg.db entrez gene identifiers genesymbols

updated 6.7 years ago by mat149 ▴ 80 • written 6.7 years ago by imalumberjack ▴ 10

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3.2k

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bioconductor biomart entrez gene identifiers ensembl ensembl mart

updated 7.6 years ago by Thomas Maurel ▴ 800 • written 7.6 years ago by daniel.carbajo • 0

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2.0k

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org.Hs.eg.db entrez gene identifiers ensemble

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by Marcus Aurelius • 0

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2.1k

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getBM entrez gene identifiers duplicate rnaseq

7.8 years ago Jose Luis Soto Vázquez • 0

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1.5k

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goseq entrez gene identifiers

updated 8.5 years ago by James W. MacDonald 67k • written 8.5 years ago by Mehmet Ilyas Cosacak • 0

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1.3k

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biomart ensembl ensemble mart entrez gene identifiers

8.7 years ago serpalma.v ▴ 60

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1.1k

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mta10 entrez gene identifiers

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by jacorvar ▴ 40

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14k

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org.hs.eg.db uniprot accessions entrez gene identifiers

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by Aditya ▴ 160

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k