Bioconductor Entrez gene identifiers

Showing : entrez gene identifiers • reset

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2.8k

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biomart entrez gene identifiers ensembl conversion

updated 6.3 years ago by Mike Smith ★ 6.6k • written 6.3 years ago by EdgeR_A_Poe ▴ 10

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3.0k

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biomart ensembl entrez gene identifiers

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by rina ▴ 30

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15k

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org.hs.eg.db entrez gene identifiers genesymbols

updated 7.1 years ago by mat149 ▴ 80 • written 7.1 years ago by imalumberjack ▴ 10

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3.4k

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bioconductor biomart entrez gene identifiers ensembl ensembl mart

updated 8.0 years ago by Thomas Maurel ▴ 800 • written 8.0 years ago by daniel.carbajo • 0

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2.1k

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org.Hs.eg.db entrez gene identifiers ensemble

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by Marcus Aurelius • 0

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2.3k

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getBM entrez gene identifiers duplicate rnaseq

8.2 years ago Jose Luis Soto Vázquez • 0

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1.6k

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goseq entrez gene identifiers

updated 8.9 years ago by James W. MacDonald 68k • written 8.9 years ago by Mehmet Ilyas Cosacak • 0

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1.3k

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biomart ensembl ensemble mart entrez gene identifiers

9.1 years ago serpalma.v ▴ 60

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1.2k

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mta10 entrez gene identifiers

updated 9.3 years ago by James W. MacDonald 68k • written 9.3 years ago by jacorvar ▴ 40

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14k

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org.hs.eg.db uniprot accessions entrez gene identifiers

updated 9.6 years ago by James W. MacDonald 68k • written 9.6 years ago by Aditya ▴ 160

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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k

Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …

Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0

Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge

Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0

Thank you for your reply James. I was worried that it was my mistake.

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Votes

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

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