Bioconductor Eset

Showing : eset • reset

vote

replies

1.7k

views

affy eset

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by AZ ▴ 30

votes

replies

2.2k

views

biobase expressionset eset

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by andrew.birnberg ▴ 20

votes

replies

1.1k

views

Minfi eset

7.8 years ago SplittingInfinity ▴ 60

votes

12k

views

microarray affy eset

updated 8.7 years ago by Gordon Smyth 53k • written 8.7 years ago by mathavanbioinfo ▴ 20

vote

replies

3.7k

views

biobase eSet expressionSet

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by Guido Hooiveld ★ 4.1k

votes

replies

1.9k

views

subsetting eSet

9.6 years ago Shamim Sarhadi ▴ 20

votes

1.5k

views

scan.upc eset

updated 10.2 years ago by Stephen Piccolo ▴ 600 • written 10.2 years ago by Jo ▴ 30

votes

1.6k

views

limma eset error ebayes

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by Vani ▴ 20

votes

replies

11k

views

limma differential expression design matrix error eset

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by Vani ▴ 20

vote

1.6k

views

limma microarray eset

10.3 years ago Vani ▴ 20

votes

replies

3.1k

views

eset annotation

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by colonppg ▴ 30

votes

replies

9.4k

views

eset annotation

updated 10.3 years ago by Diego Diez ▴ 760 • written 10.3 years ago by Vani ▴ 20

votes

replies

4.8k

views

methylumi eSet illuminahumanmethylation450k.db featureFilter

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by martens.christopher • 0

13 results • Page 1 of 1

Recent ...

Replies

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

Votes

DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Awards • All