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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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13 months ago Maria Doyle ▴ 70
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News: Translation Hackathon (community event) announcement
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.3 years ago shepherl 3.9k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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4.3 years ago shepherl 3.9k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.3 years ago shepherl 3.9k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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4.3 years ago shepherl 3.9k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.3 years ago shepherl 3.9k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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4.4 years ago shepherl 3.9k
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2018 Toronto Bioconductor Conference registration details?
conference event
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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Popular Question to Jonathan ▴ 10
Popular Question to Frederico Moraes Ferreira ▴ 100
Popular Question to richardallenfriedmanbrooklyn ▴ 20
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