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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
2.6 years ago Maria Doyle ▴ 110
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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2.6 years ago Maria Doyle ▴ 110
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
2.6 years ago Maria Doyle ▴ 110
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News: Translation Hackathon (community event) announcement
event translation community
3.4 years ago kozo.nishida • 0
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News: BioCAsia Virtual Meeting, 15-18 October 2020
news conference event News
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
conference bioc2020 event deadline News
5.8 years ago shepherl 4.2k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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5.8 years ago shepherl 4.2k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
bioconductor conference event bioc2020 News
5.8 years ago shepherl 4.2k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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5.8 years ago shepherl 4.2k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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5.8 years ago shepherl 4.2k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
bioconductor conference event News
5.9 years ago shepherl 4.2k
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2018 Toronto Bioconductor Conference registration details?
conference event
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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