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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
Bioconductor Event Community Training
2.7 years ago Maria Doyle ▴ 110
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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2.7 years ago Maria Doyle ▴ 110
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training Bioconductor Event Community News
2.7 years ago Maria Doyle ▴ 110
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News: Translation Hackathon (community event) announcement
event translation community
3.5 years ago kozo.nishida • 0
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News: BioCAsia Virtual Meeting, 15-18 October 2020
news conference event News
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
conference bioc2020 event deadline News
5.9 years ago shepherl 4.3k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
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5.9 years ago shepherl 4.3k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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5.9 years ago shepherl 4.3k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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5.9 years ago shepherl 4.3k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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5.9 years ago shepherl 4.3k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
bioconductor conference event News
6.0 years ago shepherl 4.3k
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2018 Toronto Bioconductor Conference registration details?
conference event
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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