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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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21 months ago
Maria Doyle
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Maria Doyle
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Maria Doyle
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Translation Hackathon (community event) announcement
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kozo.nishida
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BioCAsia Virtual Meeting, 15-18 October 2020
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Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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shepherl
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shepherl
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2018 Toronto Bioconductor Conference registration details?
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updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
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Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.6k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Comment: Overcoming confounding in batch effect correction
by
mimi
• 0
https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Votes
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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