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News: RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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11 months ago Maria Doyle ▴ 70
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News: Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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12 months ago Maria Doyle ▴ 70
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12 months ago Maria Doyle ▴ 70
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News: Translation Hackathon (community event) announcement
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
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4.2 years ago shepherl 3.8k
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
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4.2 years ago shepherl 3.8k
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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4.2 years ago shepherl 3.8k
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2018 Toronto Bioconductor Conference registration details?
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updated 6.4 years ago by 25k • written 6.4 years ago by • 0
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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