Showing : foldchange • reset
5
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4
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Foldchange values Limma
limma RNAseq foldchange
5.2 years ago susana.amaral.teixeira ▴ 20
4
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5
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1.4k
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All genes display positive fold change in topTable results after limma
limma microarray foldchange DEG GEO
updated 4.2 years ago by 50k • written 4.3 years ago by ▴ 40
4
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4
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826
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DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
10 months ago bhandary.8590 ▴ 20
3
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5
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4.8k
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How does edgeR calculate fold change?
DifferentialExpression DEA FC FoldChange edgeR
2.7 years ago zhxiaokang ▴ 20
2
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9
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2.3k
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extract fold change of a list of gene from EdgeR?
EdgeR RNAseq Foldchange
updated 2.8 years ago by ★ 1.3k • written 2.9 years ago by • 0
1
vote
1
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1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq DTU salmon rnaseqDTU foldchange
updated 5.0 years ago by 42k • written 5.3 years ago by ▴ 60
1
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2
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471
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
4 months ago Sabiha ▴ 20
1
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1
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2.3k
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Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 9 months ago by ★ 5.2k • written 9 months ago by ▴ 20
0
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2
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1.1k
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sigh of log2FC values in DESeq2
sign FoldChange DESeq2 reference
updated 2.4 years ago by 42k • written 2.4 years ago by • 0
0
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1
reply
900
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First time Statistical Analysis of RNA-seq
edgeR RNA-Seq log2 foldchange q_value
updated 2.3 years ago by 50k • written 2.3 years ago by • 0
0
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2
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1.6k
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DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2 TPM Foldchange
updated 2.1 years ago by 42k • written 2.1 years ago by • 0
0
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7
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2.3k
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topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 3.5 years ago by 50k • written 3.5 years ago by ▴ 20
12 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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