Showing : gcrma • reset
4
votes
3
replies
1.1k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
3
votes
4
replies
1.1k
views
gcrma problem with make.cdf.package
gcrma make.cdf.package affy
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 40
2
votes
3
replies
920
views
Using gcrma() and using the t-test to compare single genes of interest for disease vs healthy comparison?
gcrma CustomCDF Affyhgu133aExpr limma affy
updated 13 months ago by 65k • written 13 months ago by ▴ 10
2
votes
9
replies
3.3k
views
mta10cdf not installed Bioconductor
gcrma
updated 7.8 years ago by ▴ 40 • written 9.5 years ago by • 0
2
votes
3
replies
3.2k
views
gcrma vs. rma
gcrma gcrma
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 80
2
votes
7
replies
1.6k
views
Package gcrma: unused argument (validate = FALSE)
gcrma
updated 7.0 years ago by ★ 4.0k • written 7.0 years ago by ▴ 10
2
votes
3
replies
1.4k
views
unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 50
1
vote
4
replies
1.6k
views
AGI code in gcrma normalization output
gcrma software error annotation
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 40
1
vote
4
replies
6.5k
views
How is LIMMA actually calculating the average expression value
probe limma gcrma probe limma gcrma
updated 10.9 years ago by ▴ 150 • written 10.9 years ago by 50k
1
vote
4
replies
1.6k
views
Trouble with gcrma, Segfault on background correction
gcrma affy
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 30
1
vote
1
reply
1.6k
views
gcrma failed on mouse Gene 1.0 ST array
probe gcrma probe gcrma
updated 12.6 years ago by ★ 4.0k • written 12.6 years ago by ▴ 50
1
vote
8
replies
7.1k
views
Limma, SAM and Fold Change Calculation
affy limma gcrma siggenes
updated 7.1 years ago by 50k • written 16.9 years ago by ▴ 80
1
vote
2
replies
1.9k
views
Help needed: extracting raw intensity values from Affy
probe affy gcrma probe affy gcrma
updated 10.4 years ago by ▴ 20 • written 10.4 years ago by ★ 1.5k
0
votes
1
reply
1.4k
views
Is GCRMA normalization possible with oligo?
oligo pd.moe430a gcrma affymetrix normalization
updated 4.5 years ago by • 0 • written 5.4 years ago by ★ 4.0k
0
votes
1
reply
833
views
gcrma bug fixed--currently available from CVS
Cancer mgu74av2 gcrma GENE.E Cancer mgu74av2 gcrma GENE.E
updated 20.6 years ago by ★ 2.9k • written 20.6 years ago by ▴ 50
0
votes
1
reply
901
views
degraded RNA and background correction
Normalization GO gcrma Normalization GO gcrma
18.2 years ago Jenny Drnevich ★ 2.2k
0
votes
3
replies
1.4k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 4.0k
0
votes
1
reply
1.7k
views
Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 20
0
votes
1
reply
1.4k
views
double violation of normalization assumptions?
Normalization probe limma gcrma Normalization probe limma gcrma
updated 18.3 years ago by ★ 6.0k • written 18.3 years ago by ★ 2.2k
0
votes
0
replies
1.1k
views
mas5call select genes
affy gcrma simpleaffy affy gcrma simpleaffy
19.3 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
620
views
m430aprobe
probe gcrma probe gcrma
updated 20.7 years ago by ★ 13k • written 20.7 years ago by ▴ 80
0
votes
1
reply
819
views
RMA question + GCRMA question
GO gcrma GO gcrma
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 720
0
votes
3
replies
1.0k
views
how long to calculate gcrma on 16 arrays?
mgu74av2 Biobase affy gcrma mgu74av2 Biobase affy gcrma
updated 20.7 years ago by 65k • written 20.7 years ago by ★ 1.4k
0
votes
3
replies
961
views
gcrma
mgu74av2 gcrma GENE.E mgu74av2 gcrma GENE.E
updated 20.7 years ago by ▴ 410 • written 20.7 years ago by ▴ 30
0
votes
1
reply
872
views
comparing hgu133a chips with 3mg total RNA to 1mg total RNA
hgu133a gcrma hgu133a gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ★ 1.4k
0
votes
2
replies
801
views
gcrma
gcrma gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ▴ 500
0
votes
0
replies
785
views
Issue with gcrma.engine2 and user-defined negative controls
gcrma gcrma
16.0 years ago Heidi Dvinge ★ 2.0k
0
votes
0
replies
676
views
Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
17.3 years ago Manhong Dai ▴ 200
0
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0
replies
685
views
citations
gcrma gcrma
20.6 years ago Akil Abid Merchant ▴ 80
0
votes
1
reply
927
views
help w/ bg.correct.gcrma
affy gcrma affy gcrma
updated 20.6 years ago by ▴ 20 • written 20.6 years ago by ★ 2.2k
0
votes
2
replies
871
views
RMA question
gcrma gcrma
updated 20.7 years ago by ★ 2.3k • written 20.7 years ago by ▴ 720
0
votes
0
replies
761
views
Bug in gcrma_0.4.0?
Microarray Cancer gcrma Microarray Cancer gcrma
20.8 years ago James W. MacDonald 65k
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 17.0 years ago by ▴ 20 • written 17.0 years ago by ▴ 200
0
votes
2
replies
1.1k
views
Matchprobe package
cdf probe gcrma cdf probe gcrma
updated 18.7 years ago by ▴ 120 • written 18.7 years ago by ★ 13k
0
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0
replies
763
views
best algorithm Affy low end signal
affy gcrma affy gcrma
20.4 years ago Anthony Bosco ▴ 500
0
votes
0
replies
795
views
gcrma question
gcrma gcrma
20.8 years ago Phguardiol@aol.com ▴ 720
0
votes
1
reply
858
views
gcrma and memory size - rhdf5 question
affy gcrma affy gcrma
updated 20.5 years ago by 65k • written 20.5 years ago by ▴ 720
0
votes
0
replies
758
views
RE: gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
20.5 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
1
reply
919
views
gcrma memory problems in R1.8.1 and R1.9.0-devel
hgu133a gcrma hgu133a gcrma
updated 20.4 years ago by ▴ 720 • written 20.4 years ago by ★ 1.4k
0
votes
0
replies
780
views
related question about computers and bioC
GO gcrma GO gcrma
20.4 years ago Phguardiol@aol.com ▴ 720
0
votes
0
replies
764
views
informatic system requirement for microarray analysis
GO gcrma GO gcrma
20.4 years ago Phguardiol@aol.com ▴ 720
0
votes
1
reply
841
views
gcrma on small computers
Biobase reposTools affy gcrma Biobase reposTools affy gcrma
updated 20.4 years ago by ▴ 410 • written 20.4 years ago by ▴ 720
0
votes
0
replies
639
views
Test version of gcrma!
gcrma gcrma
20.4 years ago Puhong Gao ▴ 140
0
votes
2
replies
1.2k
views
iterative gcrma on 92 slides?
Normalization mgu74av2 gcrma PROcess Normalization mgu74av2 gcrma PROcess
updated 20.3 years ago by ▴ 130 • written 20.3 years ago by ★ 1.4k
0
votes
5
replies
1.4k
views
Development of GCRMA-like methods
gcrma oligo gcrma oligo
20.3 years ago Matthew Hannah ▴ 940
0
votes
1
reply
841
views
GCRMA methods
gcrma gcrma
updated 20.3 years ago by ★ 2.3k • written 20.3 years ago by ▴ 500
0
votes
0
replies
845
views
makeProbePackage problems?
probe gcrma probe gcrma
20.3 years ago Matthew Hannah ▴ 940
0
votes
1
reply
712
views
GCRMA missing value error on ATH1 chip
gcrma gcrma
updated 20.3 years ago by ▴ 410 • written 20.3 years ago by ▴ 940
0
votes
1
reply
880
views
warning message from using gcrma
gcrma gcrma
updated 20.3 years ago by ★ 2.3k • written 20.3 years ago by ▴ 100
0
votes
0
replies
731
views
Re: Bioconductor Digest, Vol 6, Issue
gcrma convert gcrma convert
20.8 years ago Leslie Cope ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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