Biostar Gene set enrichment

Showing : gene set enrichment • reset

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2.6k

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DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 5.4 years ago by Guangchuang Yu ★ 1.2k • written 5.4 years ago by kirannbishwa01 • 0

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1.9k

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topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 6.2 years ago by Lluís Revilla Sancho ▴ 710 • written 6.5 years ago by fromhj304 ▴ 10

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rna-seq bioinformatics gene ontology gene set enrichment go

updated 6.5 years ago by Guangchuang Yu ★ 1.2k • written 6.5 years ago by fromhj304 ▴ 10

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722

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gene set enrichment KEGG

updated 5.1 years ago by Lluís Revilla Sancho ▴ 710 • written 5.1 years ago by RMRG ▴ 10

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787

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gene set analysis gene set enrichment limma

updated 4.5 years ago by Gordon Smyth 47k • written 4.5 years ago by jaynishshah • 0

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819

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gsva plage differential expression gene set enrichment

4.2 years ago krassowski.michal ▴ 20

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1.4k

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limma edger barcodeplot gene set enrichment mroast

updated 5.2 years ago by Gordon Smyth 47k • written 5.2 years ago by srmaruyama • 0

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929

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camera limma gene set analysis gene set enrichment

updated 4.4 years ago by Gordon Smyth 47k • written 4.4 years ago by emeline.perthame • 0

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1000

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gene ontology go analysis gene set enrichment gene set analysis News

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by ivozeller • 0

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1.8k

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limma camera gene set analysis gene set enrichment

updated 6.1 years ago by Gordon Smyth 47k • written 6.1 years ago by natalia.pietrosemoli • 0

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2.5k

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limma goana gene set enrichment

5.4 years ago emy_66 • 0

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Comment: how can I do gene differential analysis on data after vst by Gordon Smyth 47k

I advised you to use limma-trend, which you can look up in the limma User's Guide. You simply analyse the vst values as if they were from a…

Comment: how can I do gene differential analysis on data after vst by linouhao ▴ 20

I'm so happy and surprised to get your professional reply. library(limma) library(edge) counts <- read.csv("raw_counts.cs…

Comment: can negative value microarray matrix data analysed by limma directly by Gordon Smyth 47k

The discussion on research gate is not of much value.

Answer: can negative value microarray matrix data analysed by limma directly by Gordon Smyth 47k

limma is routinely used for all the preprocessing methods that you mentioned, and some of them are covered in the limma User's Guide. Not …

Answer: how can I do gene differential analysis on data after vst by Gordon Smyth 47k

Differential expression analysis of vst values can be performed by limma-trend.

Votes

Answer: Failed to install Biobase

Answer: Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.

BiocGenerics package: 404 error during R shiny app deployment

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: HISAT2 mapping

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Prophet to linouhao ▴ 20