Bioconductor Gene set enrichment

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rna-seq bioinformatics gene ontology gene set enrichment go

updated 8.2 years ago by Guangchuang Yu ★ 1.2k • written 8.2 years ago by fromhj304 ▴ 10

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limma camera gene set analysis gene set enrichment

updated 7.8 years ago by Gordon Smyth 52k • written 7.8 years ago by natalia.pietrosemoli • 0

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DOSE clusterprofiler annotation gene ontology gene set enrichment

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.1 years ago by kirannbishwa01 ▴ 20

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limma goana gene set enrichment

7.1 years ago emy_66 • 0

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limma edger barcodeplot gene set enrichment mroast

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by srmaruyama • 0

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gene set enrichment KEGG

updated 6.8 years ago by Lluís Revilla Sancho ▴ 760 • written 6.8 years ago by RMRG ▴ 10

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gene set analysis gene set enrichment limma

updated 6.2 years ago by Gordon Smyth 52k • written 6.2 years ago by jaynishshah • 0

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1.7k

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camera limma gene set analysis gene set enrichment

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by emeline.perthame • 0

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gsva plage differential expression gene set enrichment

5.9 years ago krassowski.michal ▴ 40

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topgo gene ontology gene set enrichment rna-seq bioinformatics

updated 7.9 years ago by Lluís Revilla Sancho ▴ 760 • written 8.2 years ago by fromhj304 ▴ 10

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gene ontology go analysis gene set enrichment gene set analysis News

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by triZZla • 0

11 results • Page 1 of 1

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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360

Thank you for your detailed answer, I appreciate it and your work.

Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k

That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …

Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k

The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…

Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

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Answer: Running multiple KNN queries in parallel

Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

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Scholar to Aaron Lun ★ 28k

Teacher to Michael Love 43k

Popular Question to Dario Strbenac ★ 1.5k

Scholar to ATpoint ★ 4.6k