Bioconductor Geneontology

Showing : geneontology • reset

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346

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Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 9 weeks ago by Michael Love 42k • written 9 weeks ago by Filipe • 0

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1.6k

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rnaseq rnaseqGene geneontology

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by acram • 0

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813

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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530

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GO GeneOntology LocusIDtogeneIDconversion

19 months ago BioinFo.X • 0

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1.6k

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Annotation GeneOntology topGO GO

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Raito92 ▴ 60

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903

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GOstats Go.db GeneOntology

3.1 years ago MOHAMMAD • 0

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925

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GO.db Annotation Clusterprofile GeneOntology

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by MOHAMMAD • 0

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1.4k

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topGO enrichmentanalysis geneontology

updated 3.3 years ago by Lluís Revilla Sancho ▴ 730 • written 3.3 years ago by Aini • 0

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7.1k

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clusterprofiler geneontology

updated 6.5 years ago by thokall ▴ 160 • written 6.5 years ago by giuseppe0525 • 0

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983

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geneontology R go semantic similarity

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by manasa22.reddy • 0

10 results • Page 1 of 1

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Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Ask yourself the question how a gene that is exactly the same everywhere adds anything to any analysis. Heatmaps usually take DEGs to infer…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

I'd argue that most users, especially the general reader of a paper is interested in a visual representation of the data **and** applied cu…

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

I'd also add that plotting adjusted P-values in the y-axis of the volcano plot is not the recommended way to produce a volcano plot. This h…

Comment: Cannot connect to ExperimentHub server by Jiayu • 0

Many thanks and it also resolved the same issue for me!

Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…

Votes

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Answer: Cannot connect to ExperimentHub server

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Awards • All

Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10