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Showing :
geneontology
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924
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Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.2 years ago by
Basti
▴ 780 • written 3.2 years ago by
MOHAMMAD
• 0
2
votes
1
reply
340
views
clusterProfiler, AnnotationHub, and discrepancies in GO Terms
Atlanticsalmon
clusterPro
Salmosalar
AnnotationHub
GeneOntology
updated 9 weeks ago by
Michael Love
41k • written 9 weeks ago by
Filipe
• 0
1
vote
2
replies
903
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.1 years ago
MOHAMMAD
• 0
1
vote
4
replies
811
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
18 months ago
faiza
• 0
1
vote
3
replies
1.4k
views
topGO enrichment analysis, ontology selection.
topGO
enrichmentanalysis
geneontology
updated 3.2 years ago by
Lluís Revilla Sancho
▴ 730 • written 3.3 years ago by
Aini
• 0
1
vote
3
replies
1.6k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation
GeneOntology
topGO
GO
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
Raito92
▴ 60
0
votes
3
replies
1.6k
views
Gene ontology enrichment analysis
rnaseq
rnaseqGene
geneontology
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
acram
• 0
0
votes
6
replies
7.1k
views
question on GO analysis using clusterProfiler
clusterprofiler
geneontology
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
giuseppe0525
• 0
0
votes
0
replies
528
views
Gene Ontology on Streptococcus Pneumoniae genes sets
GO
GeneOntology
LocusIDtogeneIDconversion
19 months ago
BioinFo.X
• 0
0
votes
1
reply
982
views
GOSemSim bioconductor package
geneontology
R
go semantic similarity
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
manasa22.reddy
• 0
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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