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Fwd: Question about normalizing one color Agilent array using loess
Microarray Genetics Normalization limma marray Microarray Genetics Normalization limma
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ▴ 30
0
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0
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896
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MAANOVA comparison matrix question
Genetics Genetics
17.8 years ago Cecilia McGregor ▴ 110
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0
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876
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Question about Error in next.fix:(next.fix + ncols - 1) : NA/NaN argument
Genetics Genetics
17.8 years ago Marcelo Laia ▴ 450
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1
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1.7k
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MAANOVA - Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
Genetics Genetics
updated 17.8 years ago by ▴ 450 • written 17.8 years ago by ▴ 110
0
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1
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1.7k
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.8 years ago by ★ 1.6k • written 17.8 years ago by 25k
0
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2
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1.1k
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How can I see .C source code in affy package?
Genetics affy Genetics affy
updated 17.8 years ago by ★ 6.5k • written 17.8 years ago by ▴ 10
0
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1
reply
1.2k
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MAANOVA - how to collapse replicate spots
Genetics maanova Genetics maanova
updated 17.9 years ago by ▴ 450 • written 17.9 years ago by ▴ 110
0
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0
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809
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info su illumina
Genetics Annotation GO lumi Genetics Annotation GO lumi
17.9 years ago Pan Du ★ 1.2k
0
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1.4k
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Postdoctoral Research @ Cold Spring Harbor Laboratory
Sequencing Genetics Cancer Sequencing Genetics Cancer
18.0 years ago Matthew Vaughn ▴ 30
0
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0
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1.2k
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MolPAGE Training Workshop on Causal Inference - 19-21 May 2008
Genetics Regression Genetics Regression
18.0 years ago Brian D M Tom ▴ 50
0
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0
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1.5k
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
18.1 years ago Vincent J. Carey, Jr. 6.7k
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0
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787
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Survey for genetics labs: how do you store & manage your data?
Sequencing Genetics PROcess Sequencing Genetics PROcess
18.1 years ago Matthew Keller ▴ 100
0
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0
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1.9k
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BIRD 2008 Conference Call for papers
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.2 years ago Prof. Roland Wagner ▴ 100
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0
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1.8k
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BIRD 2008
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.2 years ago Prof. Roland Wagner ▴ 100
0
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0
replies
1.9k
views
BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.2 years ago Prof. Roland Wagner ▴ 100
0
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1
reply
754
views
linear model design
Genetics Genetics
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 10
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0
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1.7k
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Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
18.3 years ago French, Jef NIH/NIEHS ▴ 30
0
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1
reply
3.2k
views
BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
18.3 years ago Prof. Roland Wagner ▴ 100
0
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0
replies
1.6k
views
Postdoc position in statistical genetics/genomics, UCSF Epidemiology & Biostatistics
Genetics Genetics
18.4 years ago Ru-Fang Yeh ▴ 20
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0
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1.2k
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Announcement: Software developer training for Galaxy, Tuesday, October 23 4:00pm - 6:00pm, San Diego (just before the ASHG meeting)
Genetics Annotation Genetics Annotation
18.4 years ago Ross Lazarus ▴ 90
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votes
1
reply
751
views
affylmGUI: options for 'Export HTML Report'?
Genetics Genetics
updated 18.5 years ago by ▴ 450 • written 18.5 years ago by ▴ 10
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0
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1.2k
views
Input for KS test
Genetics GO GOstats Category topGO Genetics GO GOstats Category topGO
18.6 years ago Ken Termiso ▴ 250
0
votes
0
replies
866
views
ADVERTISEMENT: statistical programmer position available, Boston
Genetics Genetics
18.8 years ago Ross Lazarus ▴ 90
0
votes
1
reply
1.6k
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 30
0
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0
replies
1.2k
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
18.8 years ago grischa tödt ▴ 30
0
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0
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1.2k
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Limma - using both array and spot weights in lmFit
Genetics limma weaver Genetics limma weaver
18.8 years ago Gordon Smyth 53k
0
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0
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1.4k
views
BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
18.9 years ago Seth Falcon ★ 7.4k
0
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0
replies
876
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Fitting mixture of beta-distributions
Microarray Genetics Microarray Genetics
18.9 years ago Tapan Mehta ▴ 270
0
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3
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1.8k
views
Annotation of U95av2 array
Microarray Genetics Annotation GO Cancer hgu95av2 probe affy AnnBuilder PROcess Genetics
updated 18.9 years ago by ▴ 870 • written 18.9 years ago by 68k
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0
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1.4k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
19.0 years ago Dick Beyer ★ 1.4k
0
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0
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1.5k
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Exclude probes that show sd above 0.1 between replicate values
Genetics probe Genetics probe
19.0 years ago João Fadista ▴ 500
0
votes
0
replies
871
views
Limma - error when using duplicateCorrelation - Windows ver. Linux
Genetics probe limma Genetics probe limma
19.1 years ago Gordon Smyth 53k
0
votes
0
replies
779
views
Limma - error when using duplicateCorrelation - Windows ver. Linux
Genetics limma Genetics limma
19.1 years ago Jakob Hedegaard ▴ 170
0
votes
0
replies
863
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post-doctoral fellowship in computational methods for systems genetics
Genetics graph Genetics graph
19.2 years ago Xinxia Peng ▴ 120
0
votes
7
replies
2.1k
views
Plate or print-order effects - limma
Genetics limma Genetics limma
updated 19.2 years ago by ▴ 500 • written 19.2 years ago by 53k
0
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0
replies
1.4k
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EST´s mapped to a known structural variation region
Microarray Genetics Microarray Genetics
19.2 years ago João Fadista ▴ 500
0
votes
1
reply
1.5k
views
Time course experiment with limma
Genetics limma Genetics limma
updated 19.3 years ago by ★ 6.0k • written 19.3 years ago by ▴ 110
0
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0
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2.3k
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Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics HIV Genetics HIV
19.3 years ago Adrian Alexa ▴ 400
0
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1
reply
1.7k
views
[R] Why SAM has totally diffent results in R2.1.1 and R2.4.0
Microarray Genetics Survival multtest siggenes safe Microarray Genetics Survival multtest
updated 19.3 years ago by ▴ 900 • written 19.3 years ago by 25k
0
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1
reply
1.1k
views
limma - looking for training in limma
Genetics limma Genetics limma
updated 19.3 years ago by ★ 3.4k • written 19.3 years ago by ▴ 110
0
votes
0
replies
815
views
Limma - plotMA3by2 & imageplot3by2 - as -pdf?
Genetics limma Genetics limma
19.4 years ago Gordon Smyth 53k
0
votes
0
replies
696
views
FW: create probe file from CDF?
Genetics Cancer cdf probe gcrma Genetics Cancer cdf probe gcrma
19.4 years ago Lo, Ken ▴ 50
0
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0
replies
798
views
Limma - error when using duplicateCorrelation
Genetics limma Genetics limma
19.4 years ago Gordon Smyth 53k
0
votes
2
replies
1.0k
views
Custom CDFs from U mich for GeneChip Analysis
Genetics Cancer Genetics Cancer
updated 19.4 years ago by 68k • written 19.4 years ago by ▴ 50
0
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0
replies
853
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Checking qc
Genetics simpleaffy Genetics simpleaffy
19.4 years ago alex lam RI ▴ 310
0
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2
replies
1.1k
views
Normalization quality
Genetics Normalization affy Genetics Normalization affy
updated 19.4 years ago by 21k • written 19.4 years ago by ▴ 310
0
votes
1
reply
1.6k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 19.5 years ago by ▴ 360 • written 19.5 years ago by ▴ 10
0
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0
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1.0k
views
rflowcyt Programming Jamboree
Genetics Cancer rflowcyt Genetics Cancer rflowcyt
19.6 years ago Ryan Brinkman ▴ 10
0
votes
0
replies
746
views
Reference for Volcano plot
Genetics Genetics
19.7 years ago Gordon Smyth 53k
0
votes
3
replies
1.4k
views
Bioconductor Digest, Vol 41, Issue 4
Genetics Genetics
updated 19.7 years ago by ▴ 360 • written 19.7 years ago by 53k
337 results • Page 5 of 7
Recent ...
Replies
Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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