Bioconductor Genomicinteractions

Showing : genomicinteractions • reset

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genomicinteractions

6.6 years ago sarvesh.nikumbh ▴ 10

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GenomicInteractions gviz

updated 4.2 years ago by liz.ingsimmons ▴ 140 • written 4.2 years ago by Marco Blanchette ▴ 30

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2.5k

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gviz genomicinteractions

8.0 years ago enricoferrero ▴ 660

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.4k

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GenomicInteractions Gviz

updated 5.0 years ago by liz.ingsimmons ▴ 140 • written 5.0 years ago by Nik dAK ▴ 10

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770

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genomicInteractions annotation

updated 4.9 years ago by liz.ingsimmons ▴ 140 • written 4.9 years ago by ls760 • 0

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GenomicInteractions

updated 8.3 years ago by Malcolm Perry ▴ 40 • written 8.3 years ago by tangming2005 ▴ 190

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genomicinteractions GRanges

updated 8.2 years ago by liz.ingsimmons ▴ 140 • written 8.2 years ago by tangming2005 ▴ 190

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duplicate GenomicInteractions

3.9 years ago dogancan • 0

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by Marco Blanchette ▴ 30

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401

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InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

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799

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GenomicInteractions

4.1 years ago chang.jiaming • 0

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607

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

13 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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